| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 603,467 | Δ5,885 bp | [ybdG]–insL‑2 | [ybdG], nfsB, ybdF, ybdJ, ybdK, sokE, hokE, insL‑2 | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 603467 | 609351 | 5885 | 34 [0] | [0] 34 | [ybdG]–insL‑2 | [ybdG],nfsB,ybdF,ybdJ,ybdK,sokE,hokE,insL‑2 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 603466 | 0 (0.000) | 32 (1.100) | 25/94 | 0.0 | 100% | coding (1198/1248 nt) | ybdG | miniconductance mechanosensitive channel YbdG |
| ? | NC_000913 | 609352 = | 0 (0.000) | intergenic (+175/+107) | insL‑2/entD | IS186/IS421 transposase/phosphopantetheinyl transferase EntD | |||||
ACTGCTTAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/603418‑603466‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGC > NC_000913/609352‑609399 ACTGCTTAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAG > 1:1278631/1‑50ACTGCTTAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAG > 1:2120843/1‑50 TGCTTAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAGT > 1:963130/1‑49 CTTAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAAT > 1:2635621/1‑50 CTTAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAAT > 1:1799465/1‑50 TAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAATCC > 1:116659/1‑50 TAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAATCC > 1:911523/1‑50 AAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAATCCC > 1:1106959/1‑50 AATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAATCCCC > 1:1804616/1‑50 AATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAATCCCC < 1:1308500/50‑1 ATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAATCCCCG > 1:802240/1‑50 ATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAATCCCCG > 1:611589/1‑50 TGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAATCCCCG > 1:759980/1‑49 ACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAATCCCCGCATA > 1:1419128/1‑50 CGCCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAATCCCCGCATATCC < 1:642616/50‑1 GCCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAATCCCCGCATATCCG > 1:2284011/1‑50 CCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAATCCCCGCATATCCGG > 1:1245348/1‑50 AGAGAGCGAATATCATTGCCGGTTGGCGAGTAATCCCCGCATATCCGGTT > 1:593458/1‑50 AGAGAGCGAATATCATTGCCGGTTGGCGAGTAATCCCCGCATATCCGGTT > 1:1482598/1‑50 GAGAGCGAATATCATTGCCGGTTGGCGAGTAATCCCCGCATATCCGGTTG > 1:2689130/1‑50 AGCGAATATCATTGCCGGTTGGCGAGTAATCCCCGCATATCCGGTTGTCA < 1:550241/50‑1 AGCGAATATCATTGCCGGTTGGCGAGTAATCCCCGCATATCCGGTTGT > 1:2193869/1‑48 GAATATCATTGCCGGTTGGCGAGTAATCCCCGCATATCCGGTTGTCAGGT > 1:2629390/1‑50 ATATCATTGCCGGTTGGCGAGTAATCCCCGCATATCCGGTTGTCAGGTCA < 1:1678942/50‑1 GCCGGTTGGCGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGT < 1:56522/49‑1 GCCGGTTGGCGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGT < 1:134171/49‑1 CGGTTGGCGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAG > 1:462179/1‑50 CGGTTGGCGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAG > 1:2628755/1‑50 CGGTTGGCGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAG < 1:2423965/50‑1 GCGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCT < 1:1657774/50‑1 GCGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCT > 1:156086/1‑50 CGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTG > 1:46658/1‑50 GAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGC > 1:2381556/1‑50 GAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGC < 1:2171108/50‑1 ACTGCTTAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/603418‑603466‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGC > NC_000913/609352‑609399 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |