| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 687,860 | Δ1,185 bp | IS5‑mediated | insH‑3 | insH‑3 |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 687860 | 689044 | 1185 | 36 [0] | [0] 36 | insH‑3 | insH‑3 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 687859 | 0 (0.000) | 34 (1.140) | 28/96 | 0.0 | 100% | noncoding (1187/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 689045 = | 0 (0.000) | noncoding (1/1195 nt) | IS5 | repeat region | |||||
TTATCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/687810‑687859‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTTTTATT > NC_000913/689045‑689093 TTATCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGC < 1:522921/50‑1 ATCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCC < 1:1140529/49‑1 TCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTT < 1:1914022/50‑1 TCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTT < 1:542456/50‑1 CGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCT > 1:2557267/1‑48 TGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGT > 1:434905/1‑49 CAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAA < 1:194816/49‑1 CAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAA < 1:417949/49‑1 AACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACA < 1:1894849/50‑1 TTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATT > 1:2027706/1‑49 TATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAG > 1:815128/1‑50 TATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAG > 1:1993165/1‑50 TGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTT > 1:1191123/1‑50 AGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTA < 1:975338/50‑1 GTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGT < 1:1278169/49‑1 CCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAG < 1:1466559/50‑1 CCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAA < 1:294161/49‑1 CCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTA > 1:324929/1‑47 CTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGA < 1:705681/50‑1 GTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGAAAAGATA > 1:2092865/1‑50 TTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATAT < 1:34577/50‑1 TTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGAT < 1:218511/48‑1 TAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATT > 1:809658/1‑50 TAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATT > 1:1177439/1‑50 TAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATT > 1:2567851/1‑50 TAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATT > 1:2224687/1‑50 AGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTG > 1:2651432/1‑50 GGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGC > 1:2502542/1‑50 GGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTG < 1:583694/49‑1 GAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTG > 1:1672472/1‑50 AAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAGGATATTGCTGT < 1:2354868/50‑1 AGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTT > 1:57867/1‑50 GGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTTT < 1:406859/50‑1 GTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTTTT < 1:2398344/50‑1 GTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTTT > 1:1248259/1‑49 CCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTTTTATT < 1:2298539/50‑1 TTATCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/687810‑687859‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTTTTATT > NC_000913/689045‑689093 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |