| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,129,397 | Δ11,591 bp | flgN–flgL | flgN, flgM, flgA, flgB, flgC, flgD, flgE, flgF, flgG, flgH, flgI, flgJ, flgK, flgL | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1129397 | 1140987 | 11591 | 28 [0] | [0] 27 | flgN–flgL | flgN,flgM,flgA,flgB,flgC,flgD,flgE,flgF,flgG,flgH,flgI,flgJ,flgK,flgL |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1129396 | 0 (0.000) | 27 (0.890) | 23/98 | 0.1 | 100% | intergenic (+22/+18) | murJ/flgN | putative lipid II flippase MurJ/flagellar biosynthesis protein FlgN |
| ? | NC_000913 | 1140988 = | 0 (0.000) | intergenic (+2/+194) | flgL/rne | flagellar hook‑filament junction protein 2/ribonuclease E | |||||
AAAGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1129348‑1129396‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGCT > NC_000913/1140988‑1141035 AAAGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGT > 1:1346169/1‑50 GAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCG > 1:2342132/1‑50 ATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCT < 1:1205447/50‑1 ATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCT < 1:133668/50‑1 TTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTT < 1:402565/50‑1 TTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTT < 1:1585024/50‑1 TGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTT < 1:863547/49‑1 CCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACAT < 1:420198/50‑1 CCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACA > 1:1946773/1‑49 CGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATA > 1:892903/1‑50 ACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCA > 1:386060/1‑50 GTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGA < 1:1063501/50‑1 GTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGA < 1:707451/50‑1 GTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATG > 1:1092872/1‑49 GTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAA > 1:339437/1‑50 TAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAA < 1:2028405/49‑1 AACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACT > 1:1660524/1‑50 CAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGG > 1:2523431/1‑50 CAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGG < 1:2578584/50‑1 AATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGG > 1:181234/1‑50 TGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTA > 1:2414996/1‑50 TTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTT < 1:1103311/50‑1 CGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTG > 1:111866/1‑50 GGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGT > 1:2304387/1‑50 CTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTG > 1:1085082/1‑50 CTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTG > 1:350487/1‑50 TGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGCT < 1:2292988/50‑1 AAAGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1129348‑1129396‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGCT > NC_000913/1140988‑1141035 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |