| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,558,699 | Δ6,790 bp | intZ–[eutA] | intZ, yffL, yffM, yffN, yffO, yffP, yffQ, yffR, yffS, [eutA] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2558699 | 2565488 | 6790 | 36 [0] | [0] 36 | intZ–[eutA] | intZ,yffL,yffM,yffN,yffO,yffP,yffQ,yffR,yffS,[eutA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2558698 | 0 (0.000) | 30 (1.180) | 25/82 | 0.0 | 100% | intergenic (‑19/‑160) | eutB/intZ | ethanolamine ammonia‑lyase subunit alpha/CPZ‑55 prophage; putative phage integrase IntZ |
| ? | NC_000913 | 2565489 = | 0 (0.000) | coding (1396/1404 nt) | eutA | reactivating factor for ethanolamine ammonia‑lyase EutBC | |||||
GATATACATTGCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2558643‑2558698‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAA > NC_000913/2565489‑2565535 GATATACATTGCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCT > 1:63198/1‑49 TATACATTGCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAG > 1:1844392/1‑50 TACATTGCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGG > 1:1849354/1‑49 ACATTGCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGG > 1:466441/1‑48 CATTGCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAG < 1:122933/50‑1 ATTGCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGG < 1:2074844/50‑1 TGCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGGA > 1:1099025/1‑49 CCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGGAAAT > 1:2133364/1‑50 CGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGGAAATG < 1:1256530/50‑1 AACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGGAAATGC > 1:1395545/1‑49 AATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGGAAATGCGAGT > 1:1593250/1‑50 ATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGGAAATGCGAGTG < 1:2136895/50‑1 TGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGGAAATGCGAGTGA < 1:1598270/50‑1 TGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGGAAATGCGAGTGATT > 1:2158341/1‑50 GTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGGAAATGCGAGTGATTT > 1:569504/1‑49 GTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGGAAATGCGAGTGATTT > 1:427516/1‑49 TCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGGAAATGCGAGTGATTTCA < 1:2487131/50‑1 TCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGGAAATGCGAGTGATTTCA < 1:1211083/50‑1 AGTTTCATAAGTCGTTCCCTCAGGAAGGAAATGCGAGTGATTTCACCGT > 1:928456/1‑49 TTCATAAGTCGTTCCCTCAGGAAGGAAATGCGAGTGATTTCACCGTCACC > 1:1943666/1‑50 ATAAGTCGTTCCCTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGC < 1:319797/50‑1 ATAAGTCGTTCCCTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGC < 1:2703234/50‑1 AAGTCGTTCCCTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCA > 1:2237963/1‑49 AGTCGTTCCCTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACA < 1:2479246/50‑1 AGTCGTTCCCTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCAC < 1:2338186/49‑1 CGTTCCCTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACC > 1:391023/1‑50 GTTCCCTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACC < 1:967809/49‑1 GTTCCCTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACC > 1:2150137/1‑49 GTTCCCTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACC < 1:1815014/49‑1 TTCCCTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGA < 1:400034/50‑1 TCCCTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGAT > 1:267670/1‑50 CCCTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATC > 1:1627901/1‑50 CCCTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGAT < 1:1326852/49‑1 CCTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCC < 1:2000171/50‑1 CCTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCC < 1:1787782/50‑1 TCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGC > 1:2523657/1‑50 TCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGC > 1:1668899/1‑50 AGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGC < 1:1173290/48‑1 GAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAA < 1:1473460/50‑1 AAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAA < 1:266176/50‑1 GATATACATTGCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2558643‑2558698‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAA > NC_000913/2565489‑2565535 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |