Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 2,756,160 Δ35,091 bp [intA]–[lhgO] 33 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 2756160 2791250 35091 33 [0] [0] 35 [intA]–[lhgO] [intA],yfjH,alpA,yfjI,yfjJ,abpB,abpA,yfjM,rnlA,rnlB,yfjP,yfjQ,yfjR,ypjK,yfjS,yfjT,yfjU,yfjV,yfjW,ypjI,yfjX,yfjY,ypjJ,yfjZ,ypjF,ypjA,pinH,ypjB,ypjC,ileY,ygaQ,csiD,[lhgO]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 27561590 (0.000)32 (1.070) 26/96 0.0 100% coding (1/1242 nt) intA CP4‑57 prophage; integrase
?NC_000913 2791251 = 0 (0.000)intergenic (+1/‑22) lhgO/gabD L‑2‑hydroxyglutarate oxidase/NADP(+)‑dependent succinate‑semialdehyde dehydrogenase

CGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2756111‑2756159
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATTC  >  NC_000913/2791251‑2791299
                                                                                                  
CGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACC                                                 >  1:1371512/1‑50
 GAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCT                                                >  1:1451536/1‑50
 GAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCT                                                <  1:2596216/50‑1
   AAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTT                                              >  1:698746/1‑50
     AGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTG                                             >  1:1770379/1‑49
     AGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTG                                             >  1:20969/1‑49
      GCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGA                                            >  1:2340318/1‑49
       CTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAA                                          <  1:100354/50‑1
       CTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAA                                          <  1:2088336/50‑1
        TCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAA                                         >  1:84417/1‑50
              GTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGAT                                   >  1:279677/1‑50
                 TACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGT                                 <  1:1025765/49‑1
                 TACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGT                                 <  1:571409/49‑1
                   CGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAG                               <  1:386882/49‑1
                     TTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGA                            >  1:2478414/1‑50
                     TTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGA                            <  1:873688/50‑1
                              AACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTT                    <  1:1849975/50‑1
                              AACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTT                    <  1:1031666/50‑1
                              AACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTT                    <  1:1118979/50‑1
                              AACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACT                     <  1:2329812/49‑1
                              AACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAAC                      <  1:1172406/48‑1
                               ACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTA                   <  1:2678596/50‑1
                                  CAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACG                <  1:1611293/50‑1
                                   AGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGA               >  1:158739/1‑50
                                   AGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGA               >  1:686267/1‑50
                                    GGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGAC              <  1:2407163/50‑1
                                     GGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACA             <  1:2526803/50‑1
                                        GACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTA          <  1:945018/50‑1
                                         ACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAA         >  1:2102733/1‑50
                                           TCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACT       >  1:631957/1‑50
                                             CCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTA     >  1:368858/1‑50
                                              CCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTAT    >  1:1117155/1‑50
                                                ACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATTC  <  1:2697901/50‑1
                                                                                                  
CGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2756111‑2756159
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATTC  >  NC_000913/2791251‑2791299

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.