Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	3,362,162	Δ5,481 bp		[yhcA]–[yhcF]	[yhcA], yhcD, yhcE, insH‑10, yhcE, [yhcF]

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	3362162	3367642	5481	34 [0]	[0] 32	[yhcA]–[yhcF]	[yhcA],yhcD,yhcE,insH‑10,yhcE,[yhcF]

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3362161	0 (0.000)	32 (1.050)	28/98	0.0	100%	coding (50/675 nt)	yhcA	putative fimbrial chaperone YhcA
	?	NC_000913	3367643 =	0 (0.000)					intergenic (+1/‑184)	yhcF/yhcG	DUF1120 domain‑containing protein YhcF/DUF1016 domain‑containing protein YhcG

CTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3362115‑3362161 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCG  >  NC_000913/3367643‑3367690                                                                                                 CTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTA                                                <  1:1963335/49‑1  TCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAA                                               >  1:1908761/1‑49        ACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCC                                        >  1:1725184/1‑50              CATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAG                                  >  1:543281/1‑50               ATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGG                                 <  1:2426936/50‑1               ATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAG                                  >  1:574252/1‑49                  CACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAG                               >  1:1683108/1‑49                  CACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAG                               >  1:280054/1‑49                   ACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTA                             >  1:2616212/1‑50                   ACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGT                              <  1:245349/49‑1                    CTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTAC                            >  1:2376960/1‑50                       TATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTAT                         <  1:258506/50‑1                       TATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTAT                         >  1:1969456/1‑50                       TATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACT                           <  1:2131655/48‑1                         TTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCA                       <  1:698925/50‑1                          TTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAG                      >  1:642645/1‑50                          TTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAG                      >  1:2405955/1‑50                           TATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGG                     >  1:2580252/1‑50                           TATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAG                      <  1:1116706/49‑1                              AACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCAT                  >  1:894686/1‑50                              AACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCAT                  >  1:2315704/1‑50                              AACAACATCAATGAATACTAACAATGCCGGACAGGAGTAATATCAGGCAT                  >  1:2298846/1‑50                               ACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATT                 <  1:1752853/50‑1                                CAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTC                <  1:621084/50‑1                                  ACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGT              >  1:683715/1‑50                                    ATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTT            <  1:1189887/50‑1                                         TGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAC       <  1:2518270/50‑1                                         TGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAC       >  1:57209/1‑50                                          GAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAC       >  1:567284/1‑49                                           AATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGA     >  1:690082/1‑50                                             TACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATC   <  1:2210369/50‑1                                              ACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCG  >  1:2108581/1‑50                                                                                                 CTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3362115‑3362161 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCG  >  NC_000913/3367643‑3367690

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.