| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,761,993 | Δ8,250 bp | rhsA–yibV | rhsA, yibA, yibJ, yibG, yibS, yibV | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3761993 | 3770242 | 8250 | 32 [0] | [0] 34 | rhsA–yibV | rhsA,yibA,yibJ,yibG,yibS,yibV |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3761992 | 0 (0.000) | 32 (1.070) | 29/96 | 0.0 | 100% | intergenic (‑37/‑191) | yibF/rhsA | glutathione transferase‑like protein YibF/rhs element protein RhsA |
| ? | NC_000913 | 3770243 = | 0 (0.000) | coding (1137/1137 nt) | yibH | inner membrane protein YibH | |||||
GACGAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3761944‑3761992‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAGCAG > NC_000913/3770243‑3770290 GACGAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCT > 1:2638844/1‑50 ACGAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTC < 1:1654134/50‑1 ACGAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCT > 1:1322750/1‑49 CGAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCA < 1:1526618/50‑1 GAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAA > 1:1470146/1‑50 TTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGAT > 1:1370085/1‑50 ATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCA < 1:107884/50‑1 CCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAA < 1:1901577/49‑1 CGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATA < 1:2520894/50‑1 GAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAA < 1:1882503/50‑1 CTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGAT < 1:687101/49‑1 TTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGATAA > 1:1712327/1‑50 TGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGATAAT < 1:2329414/49‑1 TGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGATAAT < 1:2190445/49‑1 GTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGATAATG > 1:2685631/1‑49 GTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGATAATG < 1:458808/49‑1 TGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGATAATGCA > 1:2209453/1‑50 TGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGATAATGC < 1:634250/49‑1 CGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGATAATGCATC > 1:2140051/1‑50 GAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGATAATGCATC > 1:1800927/1‑49 AGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGATAATGCATC > 1:2316379/1‑48 GAAAAATATCAGTATGGCTCAATGATCCAAATAAAGATAATGCATCCAGC < 1:274636/50‑1 TATCAGTATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCA > 1:571484/1‑50 ATCAGTATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCAT > 1:2700735/1‑50 AGTATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTC < 1:1007628/49‑1 GTATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTT < 1:2335728/50‑1 GTATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTT < 1:932256/50‑1 TATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTA < 1:1355831/50‑1 TGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAGC < 1:1055637/50‑1 GCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAGCAG > 1:9485/1‑50 GCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAGCAG > 1:1045005/1‑50 GCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAGCA < 1:1646770/49‑1 GACGAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3761944‑3761992‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAGCAG > NC_000913/3770243‑3770290 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |