| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,555,491 | Δ41,523 bp | [yjiC]–lgoD | 37 genes [yjiC], ytiC, ytiD, idlP, iraD, hypT, iadA, yjiG, yjiH, kptA, yjiJ, yjiK, ytiA, yjiL, yjiM, yjiN, mdtM, rpnD, yjiR, yjiS, yjiT, yjiV, mcrC, mcrB, symE, symR, hsdS, hsdM, hsdR, mrr, yjiA, yjiX, btsT, tsr, lgoT, lgoR, lgoD |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4555491 | 4597013 | 41523 | 42 [0] | [0] 39 | [yjiC]–lgoD | [yjiC],ytiC,ytiD,idlP,iraD,hypT,iadA,yjiG,yjiH,kptA,yjiJ,yjiK,ytiA,yjiL,yjiM,yjiN,mdtM,rpnD,yjiR,yjiS,yjiT,yjiV,mcrC,mcrB,symE,symR,hsdS,hsdM,hsdR,mrr,yjiA,yjiX,btsT,tsr,lgoT,lgoR,lgoD |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4555490 | 0 (0.000) | 38 (1.280) | 27/96 | 0.0 | 100% | coding (831/831 nt) | yjiC | uncharacterized protein YjiC |
| ? | NC_000913 | 4597014 = | 0 (0.000) | intergenic (+2/+136) | lgoD/opgB | L‑galactonate oxidoreductase/phosphoglycerol transferase I | |||||
TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4555442‑4555490‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGC > NC_000913/4597014‑4597062 TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT < 1:2446272/49‑1TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT < 1:2080560/49‑1TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT < 1:856768/49‑1 TAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAG > 1:122163/1‑50 ATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGC > 1:1680591/1‑47 TCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAG < 1:1885748/49‑1 CTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGAT > 1:75097/1‑50 CTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGAT > 1:2613132/1‑50 TGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGAT > 1:2153404/1‑49 GTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTA > 1:2549197/1‑50 TATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGA < 1:2130837/46‑1 TAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTA < 1:1562983/50‑1 TAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTA < 1:330433/50‑1 TAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATT < 1:1391476/49‑1 TAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATT < 1:77820/49‑1 TAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATT < 1:1320707/49‑1 AACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTA > 1:1431737/1‑49 AACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTA > 1:576656/1‑49 AACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTA > 1:2122955/1‑49 AACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTA > 1:651844/1‑49 ACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAA < 1:194111/49‑1 CCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAG < 1:2340352/50‑1 CCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAG > 1:1329332/1‑50 TGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTT > 1:875371/1‑50 TTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATG < 1:2401862/50‑1 TTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATG < 1:1753091/50‑1 GTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAG > 1:103271/1‑50 GTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAG > 1:2291401/1‑50 GTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCA < 1:2136669/49‑1 TACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGC < 1:2274746/50‑1 ATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCG < 1:2118365/50‑1 CTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGG > 1:46586/1‑49 CCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAA < 1:957331/49‑1 CCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAA < 1:2421434/49‑1 CCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGA < 1:2664517/48‑1 CCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGA < 1:2494687/48‑1 CCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGG < 1:2359216/47‑1 CTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGT < 1:2173050/50‑1 GTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTT > 1:1455301/1‑50 GTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTG < 1:2635687/48‑1 AGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGG > 1:437465/1‑50 TAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGC < 1:2649988/50‑1 TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4555442‑4555490‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGC > NC_000913/4597014‑4597062 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |