| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,626,183 | (GCG)3→2 | coding (272‑274/1383 nt) | radA → | DNA recombination protein |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4626176 | 4626178 | 3 | 33 [0] | [0] 35 | radA | DNA recombination protein |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4626179 = | 0 (0.000) | 29 (1.120) | 23/84 | 0.0 | 100% | coding (268/1383 nt) | radA | DNA recombination protein |
| ? | NC_000913 | = 4626175 | 0 (0.000) | coding (264/1383 nt) | radA | DNA recombination protein | |||||
TTCCCCGCACCAGGGTTACCGCCAATCAGAATGGCACTTCCTGGCACCACGCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4626234‑4626179‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgccTAGTACGCGGTCGAACTCTTTAAATCCGGTGGAAAAACGCGGCAGCTC < NC_000913/4626175‑4626128 TTCCCCGCACCAGGGTTACCGCCAATCAGAATGGCACTTCCTGGCACCAC > 1:2607754/1‑50 TCCCCGCACCAGGGTTACCGCCAATCAGAATGGCACTTCCTGGCACCAC < 1:1051683/49‑1 CCCGCACCAGGGTTACCGCCAATCAGAATGGCACTTCCTGGCACCACGCC < 1:2585041/50‑1 CCGCACCAGGGTTACCGCCAATCAGAATGGCACTTCCTGGCACCACGCCG > 1:2584605/1‑50 CCGCACCAGGGTTACCGCCAATCAGAATGGCACTTCCTGGCACCACGCCG > 1:2556620/1‑50 CACCAGGGTTACCGCCAATCAGAATGGCACTTCCTGGCACCACGCCGCC > 1:2233964/1‑49 ACCAGGGTTACCGCCAATCAGAATGGCACTTCCTGGCACCACGCCGCC > 1:1757928/1‑48 CAGGGTTACCGCCAATCAGAATGGCACTTCCTGGCACCACGCCGCCTAG > 1:2591303/1‑49 AGGGTTACCGCCAATCAGAATGGCACTTCCTGGCACCACGCCGCCTAGTA > 1:1101688/1‑50 AGGGTTACCGCCAATCAGAATGGCACTTCCTGGCACCACGCCGCCTAGTA > 1:2236092/1‑50 AGGGTTACCGCCAATCAGAATGGCACTTCCTGGCACCACGCCGCCTAGTA > 1:2043819/1‑50 GTTACCGCCAATCAGAATGGCACTTCCTGGCACCACGCCGCCTAGTACGC > 1:1958707/1‑50 ACCGCCAATCAGAATGGCACTTCCTGGCACCACGCCGCCTAGTACGCGGT > 1:726713/1‑50 GCCAATCAGAATGGCACTTCCTGGCACCACGCCGCCTAGTACGCGGTCGA < 1:726173/50‑1 CCAATCAGAATGGCACTTCCTGGCACCACGCCGCCTAGTACGCGGTCGAA > 1:1376500/1‑50 CAATCAGAATGGCACTTCCTGGCACCACGCCGCCTAGTACGCGGTCGAAC > 1:2568726/1‑50 CAATCAGAATGGCACTTCCTGGCACCACGCCGCCTAGTACGCGGTCGAAC < 1:1665593/50‑1 AATCAGAATGGCACTTCCTGGCACCACGCCGCCTAGTACGCGGTCGAACT > 1:2619866/1‑50 AATCAGAATGGCACTTCCTGGCACCACGCCGCCTAGTACGCGGTCGAACT > 1:1461890/1‑50 TCAGAATGGCACTTCCTGGCACCACGCCGCCTAGTACGCGGTCGAACTCT < 1:605252/50‑1 AGAATGGCACTTCCTGGCACCACGCCGCCTAGTACGCGGTCGAACTCTTT < 1:325705/50‑1 GAATGGCACTTCCTGGCACCATGCCGCCTAGTACGCGGTCGAACTCTTT > 1:2157088/1‑49 GAATGGCACTTCCTGGCACCACGCCGCCTAGTACGCGGTCGAACTCTTTA < 1:1330309/50‑1 GAATGGCACTTCCTGGCACCACGCCGCCTAGTACGCGGTCGAACTCTTTA < 1:2005711/50‑1 GAATGGCACTTCCTGGCACCACGCCGCCTAGTACGCGGTCGAACTCTTT > 1:1599267/1‑49 TGGCACTTCCTGGCACCACGCCGCCTAGTACGCGGTCGAACTCTTTAAAT < 1:855466/50‑1 CACTTCCTGGCACCACGCCGCCTAGTACGCGGTCGAACTCTTTAAATCCG < 1:923153/50‑1 ACTTCCTGGCACCACGCCGCCTAGTACGCGGTCGAACTCTTTAAATCCGG < 1:1401736/50‑1 CTTCCTGGCACCACGCCGCCTAGTACGCGGTCGAACTCTTTAAATCCGGT < 1:787443/50‑1 TCCTGGCACCACGCCGCCTAGTACGCGGTCGAACTCTTTAAATCCGGTG > 1:94782/1‑49 TCCTGGCACCACGCCGCCTAGTACGCGGTCGAACTCTTTAAATCCGGTG > 1:2278392/1‑49 CCTGGCACCACGCCGCCTAGTACGCGGTCGAACTCTTTAAATCCGGTGG < 1:723257/49‑1 CCTGGCACCACGCCGCCTAGTACGCGGTCGAACTCTTTAAATCCGGTG < 1:1710698/48‑1 GCACCACGCCGCCTAGTACGCGGTCGAACTCTTTAAATCCGGTGGAAAAA < 1:833108/50‑1 GCACCACGCCGCCTAGTACGCGGTCGAACTCTTTAAATCCGGTGGAAAA < 1:1827837/49‑1 CACCACGCCGCCTAGTACGCGGTCGAACTCTTTAAATCCGGTGGAAAAAC < 1:1327673/50‑1 CGCCGCCTAGTACGCGGTCGAACTCTTTAAATCCGGTGGAAAAACGCGGC < 1:2675796/50‑1 CGCCGCCTAGTACGCGGTCGAACTCTTTAAATCCGGTGGAAAAACGCGGC < 1:2395097/50‑1 CCTAGTACGCGGTCGAACTCTTTAAATCCGGTGGAAAAACGCGGCAGCTC < 1:477890/50‑1 CCTAGTACGCGGTCGAACTCTTTAAATCCGGTGGAAAAACGCGGCAGCTC > 1:1678656/1‑50 TTCCCCGCACCAGGGTTACCGCCAATCAGAATGGCACTTCCTGGCACCACGCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4626234‑4626179‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgccTAGTACGCGGTCGAACTCTTTAAATCCGGTGGAAAAACGCGGCAGCTC < NC_000913/4626175‑4626128 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |