| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 997,868 | Δ6,818 bp | [elfA]–ycbF | [elfA], elfD, elfC, elfG, ycbU, ycbV, ycbF | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 997868 | 1004685 | 6818 | 32 [0] | [0] 32 | [elfA]–ycbF | [elfA],elfD,elfC,elfG,ycbU,ycbV,ycbF |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 997867 | 0 (0.000) | 32 (1.050) | 25/98 | 0.1 | 100% | intergenic (‑355/‑1) | ssuE/elfA | NADPH‑dependent FMN reductase/putative laminin‑binding fimbrial subunit |
| ? | NC_000913 | 1004686 = | 0 (0.000) | intergenic (+29/‑82) | ycbF/pyrD | putative fimbrial chaperone YcbF/dihydroorotate dehydrogenase, type 2 | |||||
TGTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGATGAAAAAAAGTGTATTGACGGCGTTTATAACTGTGGTATGTGCAAC > NC_000913/997819‑997914 | tGTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGt > 1:929123‑M1/1‑49 (MQ=255) gTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtt > 1:692386‑M1/1‑48 (MQ=255) gTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtt > 1:2677586‑M1/1‑48 (MQ=255) gTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtt > 1:1878824‑M1/1‑48 (MQ=255) tCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtt < 1:2220661‑M1/49‑3 (MQ=255) aTTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgc > 1:426998‑M1/1‑45 (MQ=255) aaaGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccg > 1:426099‑M1/1‑41 (MQ=255) aaaGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccg > 1:742446‑M1/1‑41 (MQ=255) aaGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcag > 1:2393671‑M1/1‑40 (MQ=255) aGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcagg < 1:1485696‑M1/50‑12 (MQ=255) aGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcagg < 1:2310386‑M1/50‑12 (MQ=255) gCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtc < 1:1171187‑M1/50‑14 (MQ=255) aTTATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaa < 1:548253‑M1/50‑16 (MQ=255) aTTATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaa > 1:1019658‑M1/1‑35 (MQ=255) atatTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattccct > 1:1307559‑M1/1‑29 (MQ=255) atTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttt > 1:999466‑M1/1‑27 (MQ=255) tACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttg < 1:1708137‑M1/49‑26 (MQ=255) cGAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttggtc < 1:2594121‑M1/50‑29 (MQ=255) cGAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttggtc < 1:1422877‑M1/50‑29 (MQ=255) gAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttggtcc > 1:791081‑M1/1‑21 (MQ=255) gAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttggtcc > 1:1080914‑M1/1‑21 (MQ=255) aaGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttggtccg < 1:2230691‑M1/50‑31 (MQ=255) gaTCAGGATGATAACGtttgccgcaggtcaattcccttttggtccgaact > 1:515807‑M1/1‑16 (MQ=255) gaTCAGGATGATAACGtttgccgcaggtcaattcccttttggtccgaact > 1:1696302‑M1/1‑16 (MQ=255) aTCAGGATGATAACGtttgccgcaggtcaattcccttttggtccgaactc > 1:2689119‑M1/1‑15 (MQ=255) cAGGATGATAACGtttgccgcaggtcaattcccttttggtccgaactcg > 1:954678‑M1/1‑13 (MQ=255) ggATGATAACGtttgccgcaggtcaattcccttttggtccgaactcgcac < 1:622077‑M1/50‑40 (MQ=255) atgatAACGtttgccgcaggtcaattcccttttggtccgaactcgcacat < 1:723313‑M1/50‑42 (MQ=255) atAACGtttgccgcaggtcaattcccttttggtccgaactcgcacataat < 1:1718842‑M1/50‑45 (MQ=255) tAACGtttgccgcaggtcaattcccttttggtccgaactcgcacataata > 1:278495‑M1/1‑5 (MQ=255) tAACGtttgccgcaggtcaattcccttttggtccgaactcgcacataata < 1:787325‑M1/50‑46 (MQ=255) aCGtttgccgcaggtcaattcccttttggtccgaactcgcacataatacg < 1:984086‑M1/50‑48 (MQ=255) | TGTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGATGAAAAAAAGTGTATTGACGGCGTTTATAACTGTGGTATGTGCAAC > NC_000913/997819‑997914 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |