| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,453,928 | Δ15,926 bp | gspA–[chiA] | 16 genes gspA, gspC, gspD, gspE, gspF, gspG, gspH, gspI, gspJ, gspK, gspL, gspM, gspO, bfr, bfd, [chiA] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3453928 | 3469853 | 15926 | 42 [0] | [0] 41 | gspA–[chiA] | gspA,gspC,gspD,gspE,gspF,gspG,gspH,gspI,gspJ,gspK,gspL,gspM,gspO,bfr,bfd,[chiA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3453927 | 0 (0.000) | 38 (1.330) | 32/92 | 0.0 | 100% | coding (1/420 nt) | gspB | putative general secretion pathway protein B |
| ? | NC_000913 | 3469854 = | 0 (0.000) | intergenic (‑1/+291) | chiA/tufA | endochitinase/translation elongation factor Tu 1 | |||||
GGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATGTCATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTGCTTCATCCC > NC_000913/3453878‑3453975 | gggTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT < 1:2561042‑M1/50‑1 (MQ=255)gggTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT > 1:1856750‑M1/1‑50 (MQ=255) gTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATta > 1:348419‑M1/1‑48 (MQ=255) tGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATtat < 1:2037696‑M1/50‑4 (MQ=255) gACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATtat > 1:359023‑M1/1‑46 (MQ=255) aCCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATtataa < 1:2470732‑M1/50‑6 (MQ=255) aCCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATtata < 1:1035780‑M1/49‑5 (MQ=255) ccTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATtataat < 1:224651‑M1/50‑7 (MQ=255) tttctttcTGCTCACGCGCGGCGATATAGAATTCAAACATtataatccct < 1:1424369‑M1/50‑11 (MQ=255) tttctttcTGCTCACGCGCGGCGATATAGAATTCAAACATtataatcc < 1:1008142‑M1/48‑9 (MQ=255) tctttctGCTCACGCGCGGCGATATAGAATTCAAACATtataatccctt < 1:192830‑M1/49‑12 (MQ=255) ctttctGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgt > 1:1136261‑M1/1‑37 (MQ=255) tttctGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgt > 1:1810072‑M1/1‑36 (MQ=255) tctGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgtgac > 1:1169340‑M1/1‑34 (MQ=255) tctGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgtgac > 1:1522825‑M1/1‑34 (MQ=255) tctGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgtg < 1:1455139‑M1/48‑15 (MQ=255) ctGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacg > 1:2283186‑M1/1‑33 (MQ=255) tCACGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacgtaa > 1:1621373‑M1/1‑29 (MQ=255) cACGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacgtaaa > 1:425721‑M1/1‑28 (MQ=255) cACGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacgtaaa > 1:91798‑M1/1‑28 (MQ=255) cgcgGCGATATAGAATTCAAACATtataatcccttgtgacgtaaaaactg > 1:1454945‑M1/1‑24 (MQ=255) gcggcgATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgc < 1:2682069‑M1/50‑28 (MQ=255) cggcgATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgc > 1:1513457‑M1/1‑22 (MQ=255) ggcgATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgcaa < 1:274385‑M1/50‑30 (MQ=255) gATATCGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaac < 1:1143559‑M1/50‑33 (MQ=255) gATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaa > 1:921993‑M1/1‑18 (MQ=255) atatAGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaaca < 1:462520‑M1/50‑34 (MQ=255) ataGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaa > 1:215447‑M1/1‑15 (MQ=255) ataGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaa > 1:2613327‑M1/1‑15 (MQ=255) taGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaa < 1:2166755‑M1/50‑37 (MQ=255) taGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaa < 1:93488‑M1/49‑36 (MQ=255) aGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaag > 1:391930‑M1/1‑13 (MQ=255) aGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaag > 1:1570638‑M1/1‑13 (MQ=255) aGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaag > 1:1049277‑M1/1‑13 (MQ=255) aaTTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtc > 1:1686225‑M1/1‑11 (MQ=255) ttCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcct < 1:2080550‑M1/50‑42 (MQ=255) ttCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcct < 1:111006‑M1/50‑42 (MQ=255) tCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtccta > 1:243012‑M1/1‑8 (MQ=255) cAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctac > 1:1320774‑M1/1‑7 (MQ=255) aCATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacgca < 1:2442914‑M1/50‑47 (MQ=255) aTtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacgcag > 1:1353347‑M1/1‑2 (MQ=255) ttataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacgcagg > 1:860493‑M1/1‑1 (MQ=255) | GGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATGTCATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTGCTTCATCCC > NC_000913/3453878‑3453975 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |