| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,040,502 | Δ73,763 bp | [appX]–[mdtG] | 75 genes [appX], appA, etk, etp, gfcE, gfcD, gfcC, gfcB, gfcA, insA‑4, insB‑4, cspH, cspG, ymcF, ymcE, gnsA, yccM, torS, torT, torR, torC, torA, torD, cbpM, cbpA, yccE, agp, yccJ, wrbA, ymdF, rutG, rutF, rutE, rutD, rutC, rutB, rutA, rutR, putA, ymdG, putP, efeU, efeO, efeB, phoH, pgaD, pgaC, pgaB, pgaA, dgcT, insF‑4, insE‑4, ymdE, ycdU, serX, ghrA, ycdX, ycdY, ycdZ, csgG, csgF, csgE, csgD, csgB, csgA, csgC, ymdA, ymdB, clsC, opgC, opgG, opgH, yceK, msyB, [mdtG] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1040502 | 1114264 | 73763 | 44 [0] | [0] 45 | [appX]–[mdtG] | [appX],appA,etk,etp,gfcE,gfcD,gfcC,gfcB,gfcA,insA‑4,insB‑4,cspH,cspG,ymcF,ymcE,gnsA,yccM,torS,torT,torR,torC,torA,torD,cbpM,cbpA,yccE,agp,yccJ,wrbA,ymdF,rutG,rutF,rutE,rutD,rutC,rutB,rutA,rutR,putA,ymdG,putP,efeU,efeO,efeB,phoH,pgaD,pgaC,pgaB,pgaA,dgcT,insF‑4,insE‑4,ymdE,ycdU,serX,ghrA,ycdX,ycdY,ycdZ,csgG,csgF,csgE,csgD,csgB,csgA,csgC,ymdA,ymdB,clsC,opgC,opgG,opgH,yceK,msyB,[mdtG] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1040501 | 0 (0.000) | 43 (1.440) | 35/96 | 0.0 | 100% | coding (57/93 nt) | appX | small protein AppX |
| ? | NC_000913 | 1114265 = | 0 (0.000) | coding (1226/1227 nt) | mdtG | efflux pump MdtG | |||||
GAAAAGGATAGCTGATTCTCCGCTTTTGCAAGTATGAAAGGCGAAAAATCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATGAAT > NC_000913/1114216‑1114313 | tttactttggttcgtcggcattttgttgatgtgttcgctctccacccttc < 1:1523243‑M2/1‑1 (MQ=255) tactttggttcgtcggcattttgttgatgtgttcgctctccacccttCa < 1:2005214‑M2/2‑1 (MQ=255) tggttcgtcggcattttgttgatgtgttcgctctccacccttCAGTTc < 1:2338613‑M2/6‑1 (MQ=255) ggttcgtcggcattttgttgatgtgttcgctctccacccttCAGTTCGa > 1:2345460‑M2/42‑49 (MQ=255) gttcgtcggcattttgttgatgtgttcgctctccacccttCAGTTCGATa > 1:1332447‑M2/41‑50 (MQ=255) gttcgtcggcattttgttgatgtgttcgctctccacccttCAGTTCGATa < 1:979737‑M2/10‑1 (MQ=255) gttcgtcggcattttgttgatgtgttcgctctccacccttCAGTTCGATa > 1:884940‑M2/41‑50 (MQ=255) ttcgtcggcattttgttgatgtgttcgctctccacccttCAGTTCGATAc > 1:1465193‑M2/40‑50 (MQ=255) ttcgtcggcattttgttgatgtgttcgctctccacccttCAGTTCGATAc < 1:342467‑M2/11‑1 (MQ=255) cgtcggcattttgttgatgtgttcgctctccacccttCAGTTCGATACCt > 1:1966991‑M2/38‑50 (MQ=255) cggcattttgttgatgtgttcgctctccacccttCAGTTCGATACCTggg > 1:1083937‑M2/35‑50 (MQ=255) cggcattttgttgatgtgttcgctctccacccttCAGTTCGATACCTggg > 1:925894‑M2/35‑50 (MQ=255) ggcattttgttgatgtgttcgctctccacccttCAGTTCGATACCTgggg > 1:1027245‑M2/34‑50 (MQ=255) ggcattttgttgatgtgttcgctctccacccttCAGTTCGATACCTggg < 1:485937‑M2/16‑1 (MQ=255) gcattttgttgatgtgttcgctctccacccttCAGTTCGATACCTGGGGt < 1:2316304‑M2/18‑1 (MQ=255) cattttgttgatgtgttcgctctccacccttCAGTTCGATACCTGGGGTa > 1:247906‑M2/32‑50 (MQ=255) attttgttgatgtgttcgctctccacccttCAGTTCGATACCTGGGGTAt < 1:195409‑M2/20‑1 (MQ=255) ttgttgatgtgttcgctctccgcccttCAGTTCGATACCTGGGGTATTc < 1:2516228‑M2/22‑1 (MQ=255) ttgttgatgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTc > 1:548649‑M2/28‑49 (MQ=255) ttgttgatgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTc < 1:1482309‑M2/22‑1 (MQ=255) tgttgatgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTcg < 1:393744‑M2/23‑1 (MQ=255) gttgatgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTcgac > 1:2691548‑M2/26‑50 (MQ=255) gttgatgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTcgac > 1:2542293‑M2/26‑50 (MQ=255) ttgatgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTcgac < 1:369354‑M2/25‑1 (MQ=255) gatgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTcgacgac > 1:1698167‑M2/23‑50 (MQ=255) atgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTcgacgacg < 1:543794‑M2/29‑1 (MQ=255) atgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTcgacgac > 1:1075577‑M2/22‑49 (MQ=255) atgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTcgacgac > 1:156494‑M2/22‑49 (MQ=255) tgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTcgacgacga > 1:2375758‑M2/21‑50 (MQ=255) tgtgttcgctctccacccttCAGTTCGATACCTGGGGTATTcgacgacga > 1:672013‑M2/21‑50 (MQ=255) tgttcgctctccacccttCAGTTCGATACCTGGGGTATTCGacgacgacg > 1:1758029‑M2/19‑50 (MQ=255) gctctccacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGa < 1:1703750‑M2/36‑1 (MQ=255) ctctccacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACt < 1:2283467‑M2/38‑1 (MQ=255) cacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGtt < 1:2449068‑M2/41‑1 (MQ=255) cacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGtt < 1:2573752‑M2/41‑1 (MQ=255) cacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTcc < 1:1562485‑M2/43‑1 (MQ=255) cacccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTc < 1:2102876‑M2/42‑1 (MQ=255) acccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCa < 1:176851‑M2/44‑1 (MQ=255) acccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCa < 1:2225664‑M2/44‑1 (MQ=255) acccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCa > 1:2441471‑M2/7‑50 (MQ=255) cccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCAt > 1:2173509‑M2/6‑50 (MQ=255) ccttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATg < 1:1654155‑M2/46‑1 (MQ=255) cttCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATGa < 1:157055‑M2/47‑1 (MQ=255) cAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATGaa < 1:2043545/48‑1 (MQ=255) cAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATGAAt < 1:345488/49‑1 (MQ=255) | GAAAAGGATAGCTGATTCTCCGCTTTTGCAAGTATGAAAGGCGAAAAATCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATGAAT > NC_000913/1114216‑1114313 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |