| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,184,782 | Δ6,916 bp | ubiK–yqiI | ubiK, ygiL, yqiG, insC‑5, insD‑5, yqiG, yqiH, yqiI | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3184782 | 3191697 | 6916 | 40 [0] | [0] 39 | ubiK–yqiI | ubiK,ygiL,yqiG,insC‑5,insD‑5,yqiG,yqiH,yqiI |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3184781 | 0 (0.000) | 38 (1.280) | 29/96 | 0.0 | 100% | intergenic (‑315/‑59) | ribB/ubiK | 3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/ubiquinone biosynthesis accessory factor UbiK |
| ? | NC_000913 | 3191698 = | 0 (0.000) | intergenic (+2/+41) | yqiI/glgS | putative fimbrial protein YqiI/surface composition regulator | |||||
GAGGGACCGTTTAGTAAAGACGTAATCCTGAAAATCACCTATAACTAGTATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTGCTC > NC_000913/3191649‑3191747 | gctaatgattagcggcagcaacgcatagcttcacataattctggtttata < 1:381850‑M2/1‑1 (MQ=255)gctaatgattagcggcagcaacgcatagcttcacataattctggtttata < 1:181936‑M2/1‑1 (MQ=255) tgattagcggcagcaacgcatagcttcacataattctggtttatATCTaa < 1:795746‑M2/6‑1 (MQ=255) attagcggcagcaacgcatagcttcacataattctggtttatATCTAATa < 1:2601227‑M2/8‑1 (MQ=255) attagcggcagcaacgcatagcttcacataattctggtttatATCTAATa > 1:1247242‑M2/43‑50 (MQ=255) attagcggcagcaacgcatagcttcacataattctggtttatATCTAATa < 1:1661328‑M2/8‑1 (MQ=255) ttagcggcagcaacgcatagcttcacataattctggtttatATCTAATa > 1:1896561‑M2/42‑49 (MQ=255) ttagcggcagcaacgcatagcttcacataattctggtttatATCTAATAc < 1:951632‑M2/9‑1 (MQ=255) agcggcagcaacgcatagcttcacataattctggtttatATCTAATACa < 1:1099676‑M2/10‑1 (MQ=255) agcggcagcaacgcatagcttcacataattctggtttatATCTAATACa < 1:2535513‑M2/10‑1 (MQ=255) agcggcagcaacgcatagcttcacataattctggtttatATCTAATACa > 1:1879870‑M2/40‑49 (MQ=255) agcggcagcaacgcatagcttcacataattctggtttatATCTAATACa < 1:1209860‑M2/10‑1 (MQ=255) gcggcagcaacgcatagcttcacataattctggtttatATCTAATACaa < 1:1751646‑M2/11‑1 (MQ=255) cggcagcaacgcatagcttcacataattctggtttatATCTAATACAAac < 1:92511‑M2/13‑1 (MQ=255) ggcagcaacgcatagcttcacataattctggtttatATCTAATACAAaca > 1:619703‑M2/37‑50 (MQ=255) cagcaacgcatagcttcacataattctggtttatATCTAATACAAacac > 1:767544‑M2/35‑49 (MQ=255) cagcaacgcatagcttcacataattctggtttatATCTAATACAAacac > 1:1219725‑M2/35‑49 (MQ=255) agcaacgcatagcttcacataattctggtttatATCTAATACAAACACt > 1:113967‑M2/34‑49 (MQ=255) agcaacgcatagcttcacataattctggtttatATCTAATACAAACACTa < 1:1354819‑M2/17‑1 (MQ=255) aacgcatagcttcacataattctggtttatATCTAATACAAGCACTaaaa < 1:2499500‑M2/20‑1 (MQ=255) aacgcatagcttcacataattctggtttatATCTAATACAAACACTaaaa < 1:1913365‑M2/20‑1 (MQ=255) acgcatagcttcacataattctggtttatATCTAATACAAACACTAAAAc < 1:136009‑M2/21‑1 (MQ=255) gcatagcttcacataattctggtttatATCTAATACAAACACTAAAACgg < 1:483174‑M2/23‑1 (MQ=255) atagcttcacataattctggtttatATCTAATACAAACACTAAAACGGGc > 1:1568300‑M2/26‑50 (MQ=255) atagcttcacataattctggtttatATCTAATACAAACACTAAAACGGGc < 1:257106‑M2/25‑1 (MQ=255) agcttcacataattctggtttatATCTAATACAAACACTAAAACGGGCCa > 1:1877632‑M2/24‑50 (MQ=255) ttcacataattctggtttatATCTAATACAAACACTAAAACGGGCCAt > 1:413018‑M2/21‑48 (MQ=255) cacataattctggtttatATCTAATACAAACACTAAAACGGGCCATCa < 1:25271‑M2/30‑1 (MQ=255) acataattctggtttatATCTAATACAAACACTAAAACGGGCCATCAgg < 1:1832714‑M2/32‑1 (MQ=255) ataattctggtttatATCTAATACAAACACTAAAACGGGCCATCAGGccc > 1:2611573‑M2/16‑50 (MQ=255) taattctggtttatATCTAATACAAACACTAAAACGGGCCATCAGGCCCg > 1:333549‑M2/15‑50 (MQ=255) taattctggtttatATCTAATACAAACACTAAAACGGGCCATCAGGCCCg > 1:349999‑M2/15‑50 (MQ=255) attctggtttatATCTAATACAAACACTAAAACGGGCCATCAGGCCCGt > 1:381509‑M2/13‑49 (MQ=255) attctggtttatATCTAATACAAACACTAAAACGGGCCATCAGGCCCGt > 1:1883752‑M2/13‑49 (MQ=255) tttatATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAg < 1:2430866‑M2/45‑1 (MQ=255) gtatATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGt > 1:1012796‑M2/5‑50 (MQ=255) tatATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTg > 1:2291107‑M2/4‑50 (MQ=255) atATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTGc > 1:1889255‑M2/3‑50 (MQ=255) aTCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTGctc > 1:1226430/1‑50 (MQ=255) | GAGGGACCGTTTAGTAAAGACGTAATCCTGAAAATCACCTATAACTAGTATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTGCTC > NC_000913/3191649‑3191747 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |