| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,466,545 | Δ9,634 bp | [intS]–[ypdJ] | 15 genes [intS], yfdG, yfdH, yfdI, yfdK, yfdL, yfdM, yfdN, yfdO, yfdP, yfdQ, yfdR, yfdS, [yfdT], [ypdJ] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2466545 | 2476178 | 9634 | 38 [0] | [0] 38 | [intS]–[ypdJ] | [intS],yfdG,yfdH,yfdI,yfdK,yfdL,yfdM,yfdN,yfdO,yfdP,yfdQ,yfdR,yfdS,[yfdT],[ypdJ] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2466544 | 0 (0.000) | 38 (1.250) | 33/98 | 0.0 | 100% | intergenic (+161/‑1) | argW/intS | tRNA‑Arg/CPS‑53 (KpLE1) prophage; prophage CPS‑53 integrase |
| ? | NC_000913 | 2476179 = | 0 (0.000) | coding (86/141 nt) | ypdJ | CPS‑53 (KpLE1) prophage; putative uncharacterized protein YpdJ | |||||
TGACGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCATGCTCACCGTTAAGCAGATTGAAGCAGCAAAGCCGAAAGAAAAACCA > NC_000913/2466496‑2466592 | tGACGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCt < 1:1601395‑M1/50‑2 (MQ=255)tGACGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCt < 1:27462‑M1/50‑2 (MQ=255) aCGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCta < 1:1997887‑M1/49‑3 (MQ=255) cGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCta > 1:1161028‑M1/1‑46 (MQ=255) ggTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagc > 1:2261629‑M1/1‑44 (MQ=255) tAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagcca > 1:1456286‑M1/1‑42 (MQ=255) aaaaGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccata > 1:1799126‑M1/1‑40 (MQ=255) aaaGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccatac < 1:2141955‑M1/50‑12 (MQ=255) aaGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccataca < 1:1289969‑M1/50‑13 (MQ=255) tGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacagcc > 1:1400091‑M1/1‑35 (MQ=255) ggATAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacatcct > 1:2682213‑M1/1‑34 (MQ=255) ggATAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacagcct > 1:2112227‑M1/1‑34 (MQ=255) gATAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacagcct < 1:1203054‑M1/49‑17 (MQ=255) gATAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacagcct > 1:1044422‑M1/1‑33 (MQ=255) gATAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacagcct > 1:25825‑M1/1‑33 (MQ=255) tAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacagcctca > 1:1215600‑M1/1‑31 (MQ=255) tAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacagcctca > 1:1134540‑M1/1‑31 (MQ=255) aaaaTAATTTTACCCACCGGATTTTTACCCtagagccatacagcctcaca > 1:674067‑M1/1‑30 (MQ=255) aaaTAATTTTACCCACCGGATTTTTACCCtagagccatacagcctcacac > 1:249525‑M1/1‑29 (MQ=255) aataatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacact > 1:2230356‑M1/1‑28 (MQ=255) ataatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactc > 1:1170680‑M1/1‑27 (MQ=255) ataatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactc < 1:557759‑M1/50‑24 (MQ=255) taatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactc > 1:2043243‑M1/1‑26 (MQ=255) tttACCCACCGGATTTTTACCCtagagccatacagcctcacactcgat > 1:210944‑M1/1‑22 (MQ=255) ttACCCACCGGATTTTTACCCtagagccatacagcctcacactcgatgag > 1:1438447‑M1/1‑21 (MQ=255) ttACCCACCGGATTTTTACCCtagagccatacagcctcacactcgatga < 1:1085991‑M1/49‑29 (MQ=255) tACCCACCGGATTTTTACCCtagagccatacagcctcacactcgatgagg > 1:1881912‑M1/1‑20 (MQ=255) cccACCGGATTTTTACCCtagagccatacagcctcacactcgatgaggcc > 1:512057‑M1/1‑18 (MQ=255) ccACCGGATTTTTACCCtagagccatacagcctcacactcgatgaggcct > 1:163068‑M1/1‑17 (MQ=255) aCCGGATTTTTACCCtagagccatacagcctcacactcgatgaggcctgt > 1:402456‑M1/1‑15 (MQ=255) cGGATTTTTACCCtagagccatacagcctcacactcgatgaggcctgtca < 1:2306594‑M1/50‑38 (MQ=255) aTTTTTACCCtagagccatacagcctcacactcgatgaggcctgtcagtt > 1:1706000‑M1/1‑10 (MQ=255) tttttACCCtagagccatacagcctcacactcgatgaggcctgtcagttt < 1:272217‑M1/50‑42 (MQ=255) ttttACCCtagagccatacagcctcacactcgatgaggcctgtcagtttc > 1:2301642‑M1/1‑8 (MQ=255) ttttACCCtagagccatacagcctcacactcgatgaggcctgtcagtttc > 1:1339741‑M1/1‑8 (MQ=255) tACCCtagagccatacagcctcacactcgatgaggcctgtcagtttctt < 1:48809‑M1/49‑45 (MQ=255) tACCCtagagccatacagcctcacactcgatgaggcctgtcagtttctt > 1:520244‑M1/1‑5 (MQ=255) cctagagccatacagcctcacactcgatgaggcctgtcagtttcttaaaa < 1:2464785‑M1/50‑49 (MQ=255) | TGACGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCATGCTCACCGTTAAGCAGATTGAAGCAGCAAAGCCGAAAGAAAAACCA > NC_000913/2466496‑2466592 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |