| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 332,366 | Δ44,951 bp | pdeL–yaiL | 39 genes pdeL, yahB, yahC, yahD, yahE, yahF, yahG, yahH, yahI, yahJ, yahK, yahL, yahM, yahN, yahO, prpR, prpB, prpC, prpD, prpE, codB, codA, cynR, cynT, cynS, cynX, lacA, lacY, lacZ, lacI, mhpR, mhpA, mhpB, mhpC, mhpD, mhpF, mhpE, mhpT, yaiL |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 332366 | 377316 | 44951 | 51 [0] | [0] 49 | pdeL–yaiL | pdeL,yahB,yahC,yahD,yahE,yahF,yahG,yahH,yahI,yahJ,yahK,yahL,yahM,yahN,yahO,prpR,prpB,prpC,prpD,prpE,codB,codA,cynR,cynT,cynS,cynX,lacA,lacY,lacZ,lacI,mhpR,mhpA,mhpB,mhpC,mhpD,mhpF,mhpE,mhpT,yaiL |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 332365 | 0 (0.000) | 48 (1.580) | 36/98 | 0.0 | 100% | intergenic (+489/‑6) | yahV/pdeL | protein YahV/DNA‑binding transcriptional activator/c‑di‑GMP phosphodiesterase PdeL |
| ? | NC_000913 | 377317 = | NA (NA) | intergenic (+6/+218) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
CCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGG > NC_000913/377270‑377366 | atcgacaggtaatcactcatactgaacagcgataaaagataaaggtgGAt < 1:2456677‑M2/3‑1 (MQ=255)atcgacaggtaatcactcatactgaacagcgataaaagataaaggtgGAt < 1:2032379‑M2/3‑1 (MQ=255) tcgacaggtaatcactcatactgaacagcgataaaagataaaggtgGATa < 1:591193‑M2/4‑1 (MQ=255) gacaggtaatcactcatactgaacagcgataaaagataaaggtgGATaa < 1:1298405‑M2/5‑1 (MQ=255) gacaggtaatcactcatactgaacagcgataaaagataaaggtgGATaa < 1:1976116‑M2/5‑1 (MQ=255) acaggtaatcactcatactgaacagcgataaaagataaaggtgGATAAGt > 1:1243031‑M2/44‑50 (MQ=255) acaggtaatcactcatactgaacagcgataaaagataaaggtgGATAAGt < 1:202391‑M2/7‑1 (MQ=255) gtaatcactcatactgaacagcgataaaagataaaggtgGATAAGTCGTg < 1:1608504‑M2/11‑1 (MQ=255) ggaatcactcattctgaacagcgataaaagataaaggtgGATAAGTCGTg < 1:2622597‑M2/11‑1 (MQ=255) taatcactcatactgaacagcgataaaagataaaggtgGATAAGTCGTgc < 1:1531271‑M2/12‑1 (MQ=255) aatcactcatactgaacagcgataaaagataaaggtgGATAAGTCGTgcg > 1:1327841‑M2/38‑50 (MQ=255) aatcactcatactgaacagcgataaaagataaaggtgGATAAGTCGTgcg > 1:178644‑M2/38‑50 (MQ=255) cactcatactgaacagcgataaaagataaaggtgGATAAGTCGTgcg > 1:64852‑M2/35‑47 (MQ=255) actcatactgaacagcgataaaagataaaggtgGATAAGTCGTgcg > 1:1106674‑M2/34‑46 (MQ=255) actcatactgaacagcgataaaagataaaggtgGATAAGTCGTgcg > 1:2435140‑M2/34‑46 (MQ=255) ctcatactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGAt > 1:1543700‑M2/33‑50 (MQ=255) catactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGc > 1:1428398‑M2/31‑50 (MQ=255) atactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGcc > 1:2574858‑M2/30‑50 (MQ=255) tactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCt < 1:944080‑M2/22‑1 (MQ=255) ctgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTg < 1:1103335‑M2/23‑1 (MQ=255) ctgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGa > 1:287429‑M2/27‑50 (MQ=255) aacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGAt < 1:1393913‑M2/25‑1 (MQ=255) aacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGAt < 1:2301213‑M2/25‑1 (MQ=255) aacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGAt < 1:1675811‑M2/25‑1 (MQ=255) aacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATg < 1:1251555‑M2/26‑1 (MQ=255) acagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGc > 1:536382‑M2/23‑49 (MQ=255) acagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCg < 1:1992619‑M2/28‑1 (MQ=255) acagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCg < 1:2336733‑M2/28‑1 (MQ=255) agcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGAc > 1:395093‑M2/21‑50 (MQ=255) gataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGc > 1:2558158‑M2/18‑49 (MQ=255) ataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTa > 1:1500192‑M2/17‑50 (MQ=255) aaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATgc > 1:623202‑M2/14‑50 (MQ=255) aaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATg < 1:1946745‑M2/36‑1 (MQ=255) gataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGcgcg > 1:292629‑M2/11‑50 (MQ=255) ataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGt < 1:2636906‑M2/41‑1 (MQ=255) ataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGt < 1:1185891‑M2/41‑1 (MQ=255) aaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCt > 1:376807‑M2/8‑50 (MQ=255) aaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCt < 1:1224399‑M2/43‑1 (MQ=255) aaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCt > 1:265918‑M2/7‑49 (MQ=255) aaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCt < 1:2101145‑M2/43‑1 (MQ=255) aaggtgGATAAGTCGTGCGCAGACGCCTGATGCGACGCTATGCGCGTCtt < 1:713555‑M2/44‑1 (MQ=255) aggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTa > 1:2118919‑M2/6‑50 (MQ=255) ggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTAt > 1:1783787‑M2/5‑50 (MQ=255) gtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTAt > 1:677584‑M2/4‑49 (MQ=255) gtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATc < 1:1340268‑M2/47‑1 (MQ=255) gtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATc < 1:1415667‑M2/47‑1 (MQ=255) tgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCa < 1:2603252‑M2/48‑1 (MQ=255) tgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCa < 1:1325285‑M2/48‑1 (MQ=255) gATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAgg < 1:658137/50‑1 (MQ=255) | CCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGG > NC_000913/377270‑377366 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |