| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,888,432 | Δ18,167 bp | tnaC–bglG | 17 genes tnaC, tnaA, tnaB, mdtL, yidZ, yieE, yieF, adeP, yieH, cbrB, cbrC, yieK, yieL, bglH, bglB, bglF, bglG |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3888432 | 3906598 | 18167 | 24 [0] | [0] 24 | tnaC–bglG | tnaC,tnaA,tnaB,mdtL,yidZ,yieE,yieF,adeP,yieH,cbrB,cbrC,yieK,yieL,bglH,bglB,bglF,bglG |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3888431 | 0 (0.000) | 23 (0.770) | 19/96 | 0.2 | 100% | intergenic (+239/‑4) | mnmE/tnaC | 5‑carboxymethylaminomethyluridine‑tRNA synthase GTPase subunit/tnaAB operon leader peptide |
| ? | NC_000913 | 3906599 = | 0 (0.000) | intergenic (‑32/+254) | bglG/phoU | transcriptional antiterminator BglG/negative regulator of the pho regulon | |||||
GGTGATTTGCATGTTCATAGCAAGGACCTTTTTTATAAACAAAAAAACCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATGCAG > NC_000913/3906550‑3906648 | aaaactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcc > 1:2574940‑M2/50‑50 (MQ=255)aaaactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcc < 1:1374481‑M2/1‑1 (MQ=255)aaaactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcc > 1:1473786‑M2/50‑50 (MQ=255)aaaactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcc < 1:1099828‑M2/1‑1 (MQ=255) aaactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCg < 1:2461484‑M2/2‑1 (MQ=255) aactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGa > 1:1358031‑M2/48‑50 (MQ=255) aactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGa > 1:1932457‑M2/48‑50 (MQ=255) ctctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACt < 1:1803505‑M2/5‑1 (MQ=255) tgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCa > 1:2447567‑M2/43‑50 (MQ=255) gagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCAc > 1:1438516‑M2/42‑50 (MQ=255) tgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAg < 1:1391269‑M2/12‑1 (MQ=255) taataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGt < 1:654329‑M2/13‑1 (MQ=255) taatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATtc > 1:2312500‑M2/34‑50 (MQ=255) aatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATtct > 1:1686180‑M2/33‑50 (MQ=255) tgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTctct > 1:1747126‑M2/31‑50 (MQ=255) tagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTgg > 1:742940‑M2/29‑50 (MQ=255) cctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTa < 1:135657‑M2/25‑1 (MQ=255) cctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTa < 1:830464‑M2/25‑1 (MQ=255) gtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTc < 1:487298‑M2/29‑1 (MQ=255) cgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGtttt < 1:16100‑M2/36‑1 (MQ=255) ggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCt < 1:2019677‑M2/40‑1 (MQ=255) taagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCg < 1:1849566‑M2/43‑1 (MQ=255) agtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGaa > 1:1191652‑M2/6‑50 (MQ=255) cGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATGCAg < 1:720501/50‑1 (MQ=255) | GGTGATTTGCATGTTCATAGCAAGGACCTTTTTTATAAACAAAAAAACCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATGCAG > NC_000913/3906550‑3906648 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |