mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 50 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,034,771 | 0 | C | T | 68.8% | 34.4 / 25.2 | 32 | A55V (GCT→GTT) | hemG | protoporphyrinogen oxidase |
| * | NC_000913 | 224,771 | 0 | C | G | 60.3% | 7.2 / 93.3 | 68 | noncoding (1001/1542 nt) | rrsH | 16S ribosomal RNA |
| * | NC_000913 | 224,768 | 0 | C | A | 59.4% | 0.8 / 106.2 | 69 | noncoding (998/1542 nt) | rrsH | 16S ribosomal RNA |
| * | NC_000913 | 224,759 | 0 | T | C | 56.6% | ‑6.1 / 62.4 | 53 | noncoding (989/1542 nt) | rrsH | 16S ribosomal RNA |
| * | NC_000913 | 224,809 | 0 | G | C | 51.7% | 34.8 / 100.6 | 58 | noncoding (1039/1542 nt) | rrsH | 16S ribosomal RNA |
| * | NC_000913 | 224,813 | 0 | G | T | 49.1% | 52.5 / 80.9 | 53 | noncoding (1043/1542 nt) | rrsH | 16S ribosomal RNA |
| * | NC_000913 | 612,647 | 0 | C | T | 44.8% | 7.2 / 33.4 | 29 | intergenic (‑153/‑90) | fepA/fes | ferric enterobactin outer membrane transporter/enterochelin esterase |
| * | NC_000913 | 4,176,571 | 0 | C | G | 44.4% | ‑2.5 / 10.1 | 9 | P210A (CCG→GCG) | tufB | translation elongation factor Tu 2 |
| * | NC_000913 | 226,967 | 0 | T | G | 42.9% | 38.2 / 42.2 | 28 | noncoding (1209/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_000913 | 226,968 | 0 | G | A | 42.9% | 37.7 / 31.3 | 28 | noncoding (1210/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_000913 | 4,198,340 | 0 | A | G | 40.9% | 8.1 / 22.9 | 22 | T209A (ACC→GCC) | hemE | uroporphyrinogen decarboxylase |
| * | NC_000913 | 226,982 | 0 | T | A | 40.6% | 53.8 / 40.6 | 32 | noncoding (1224/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_000913 | 226,977 | 0 | T | G | 38.2% | 56.5 / 45.2 | 34 | noncoding (1219/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_000913 | 226,985 | 0 | G | A | 38.2% | 55.0 / 33.5 | 34 | noncoding (1227/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_000913 | 226,979 | 0 | C | T | 37.1% | 57.1 / 32.8 | 35 | noncoding (1221/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_000913 | 226,988 | 0 | A | C | 37.1% | 56.6 / 45.3 | 35 | noncoding (1230/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_000913 | 1,186,970 | 0 | A | T | 37.0% | 37.7 / 10.4 | 27 | Y376F (TAC→TTC) | pepT | peptidase T |
| * | NC_000913 | 4,070,462 | 0 | T | C | 36.4% | 24.1 / 31.1 | 33 | intergenic (‑61/+53) | yihR/yihS | putative aldose 1‑epimerase YihR/sulfoquinovose isomerase |
| * | NC_000913 | 3,471,048 | 0 | G | A | 29.3% | 75.7 / 29.4 | 41 | T94T (ACC→ACT) | tufA | translation elongation factor Tu 1 |
| * | NC_000913 | 757,795 | 0 | T | C | 28.6% | 36.3 / 18.2 | 28 | L36P (CTG→CCG) | sdhB | succinate:quinone oxidoreductase, iron‑sulfur cluster binding protein |