| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,948,805 | (G)6→7 | coding (1165/1521 nt) | yifB ← | putative magnesium chelatase YifB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,948,799 | 1 | . | G | 95.2% | 71.6 / ‑2.6 | 21 | coding (1171/1521 nt) | yifB | putative magnesium chelatase YifB |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base G (8/12); total (9/12) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.29e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TAACGGTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑GGGGGG‑TGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGTC > NC_000913/3948751‑3948841 | tAACGGTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGcc < 1:2347975/49‑1 (MQ=255) cGGTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑gggg > 1:1355510/1‑50 (MQ=255) ggCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑gggggggt > 1:557280/1‑48 (MQ=255) tgctTTCTCCCGGCACTACCGTTTTACTCAAAATGCCGGGGGGG‑TGGTaa > 1:1783760/1‑50 (MQ=255) tgctTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑GGGGGGTTGGTaa > 1:465354/1‑50 (MQ=255) ttCTCCCGGCACTACCGTTTTACTCAAAATGCCGGGGGGG‑TGGTAATgg > 1:238123/1‑49 (MQ=255) ctcCCGGCACTACCGTTTTACTCAAAATGCCGGGGGGG‑TGGTAATGGGa < 1:2280460/49‑1 (MQ=255) ccGGCACTACCGTTTTACTCAAAATGCCGGGGGGG‑TGGTAATGGGAtctc < 1:2217531/50‑1 (MQ=255) ccGGCACTACCGTTTTACTCAAAATGCCGGGGGGG‑TGGTAATGGGAtct < 1:25717/49‑1 (MQ=255) cGGCACTACCGTTTTACTCAAAATGCCGGGGGGG‑TGGTAATGGGATCTcc < 1:436440/50‑1 (MQ=255) cGGCACTACCGTTTTACTCAAAATGCCGGGGGGG‑TGGTAATGGGATCTcc < 1:2347964/50‑1 (MQ=255) ggCACTACCGTTTTACTCAAAATGCCGGGGGGG‑TGGTAATGGGAtctc > 1:701409/1‑48 (MQ=255) ggCACTACCGTTTTACTCAAAATGCCGGGGGGG‑TGGTAATGGGATCTCCa < 1:2258590/50‑1 (MQ=255) aCCGTTTTACTCAAAATGCCGGGGGGG‑TGGTAATGGGATCTCCAGTga > 1:1345139/1‑48 (MQ=255) gTTTTACTCAAAATGCCGGGGGGG‑TGGTAATGGGATCTCCAGTga > 1:214223/1‑45 (MQ=255) ttttACTCAAAATGCCGGGGGGG‑TGGTAATGGGATCTCCAGTGAGAGATc < 1:637856/50‑1 (MQ=255) ttACTCAAAATGCCGGGGGGG‑TGGTAATGGGATCTCCAGTGAGAGATCg < 1:246820/49‑1 (MQ=255) aaaaTGCCGGGGGGG‑TGGTAATGGGATCTCCAGTGAGAGATCGAAGCg < 1:1793792/48‑1 (MQ=255) aaaaTGCCGGGGGGG‑TGGTAATGGGATCTCCAGTGAGAGATCGAAGCg < 1:830622/48‑1 (MQ=255) aaaTGCCGGGGGGG‑TGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGTc < 1:2119838/50‑1 (MQ=255) aaaTGCCGGGGGGG‑TGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGTc < 1:1332253/50‑1 (MQ=255) aTGCCGGGGGGG‑TGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGTc > 1:1942947/1‑48 (MQ=255) aTGCCGGGGGGG‑TGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGTc > 1:1808059/1‑48 (MQ=255) aTGCCGGGGGGG‑TGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGTc > 1:1393603/1‑48 (MQ=255) | TAACGGTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑GGGGGG‑TGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGTC > NC_000913/3948751‑3948841 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |