| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 263,514 | Δ61,897 bp | [ykfI]–ykgH | 71 genes [ykfI], yafW, ykfH, ykfG, yafX, ykfF, ykfB, yafY, yafZ, ykfA, perR, insN, insI‑1, insN, eyeA, ykfC, insH‑1, mmuP, mmuM, afuC, afuB, insB‑2, insA‑2, yagB, yagA, yagE, yagF, yagG, yagH, xynR, argF, ykgS, insB‑3, insA‑3, yagJ, yagK, yagL, yagM, ykgV, yagN, intF, yagP, paoD, paoC, paoB, paoA, yagU, ykgJ, ecpE, ecpD, ecpC, ecpB, ecpA, ecpR, ykgL, ykgO, ykgM, ykgR, ykgP, eaeH, insE‑1, insF‑1, ykgA, rclC, rclB, rclA, rclR, ykgE, ykgF, ykgG, ykgH |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 263514 | 325410 | 61897 | 37 [0] | [0] 37 | [ykfI]–ykgH | [ykfI],yafW,ykfH,ykfG,yafX,ykfF,ykfB,yafY,yafZ,ykfA,perR,insN,insI‑1,insN,eyeA,ykfC,insH‑1,mmuP,mmuM,afuC,afuB,insB‑2,insA‑2,yagB,yagA,yagE,yagF,yagG,yagH,xynR,argF,ykgS,insB‑3,insA‑3,yagJ,yagK,yagL,yagM,ykgV,yagN,intF,yagP,paoD,paoC,paoB,paoA,yagU,ykgJ,ecpE,ecpD,ecpC,ecpB,ecpA,ecpR,ykgL,ykgO,ykgM,ykgR,ykgP,eaeH,insE‑1,insF‑1,ykgA,rclC,rclB,rclA,rclR,ykgE,ykgF,ykgG,ykgH |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 263513 | 0 (0.000) | 34 (1.290) | 30/94 | 0.0 | 100% | coding (157/342 nt) | ykfI | CP4‑6 prophage; toxin of the YkfI‑YafW toxin‑antitoxin system |
| ? | NC_000913 | 325411 = | 0 (0.000) | intergenic (‑47/+166) | ykgH/betA | uncharacterized protein YkgH/choline dehydrogenase | |||||
TTTCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/263465‑263513‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCAT > NC_000913/325411‑325458 TTTCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGA > 1:2318388/1‑48 TTCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATA < 1:950521/49‑1 TTCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATA < 1:933428/49‑1 TCTACCAGAAAATTCATGGCATCGGCTAGGGTGATACCGGCATCGATAG < 1:1565488/49‑1 TCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGT > 1:238945/1‑50 ACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTG > 1:465437/1‑50 CCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTG > 1:1173190/1‑49 CCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTG < 1:2095722/49‑1 CAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTA > 1:639309/1‑50 CAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTA > 1:1385290/1‑50 CAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTA < 1:2012908/50‑1 AGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTAT > 1:906158/1‑50 AGAAAATTCACGGCATCGGCTAGGGAGATACCGGCATCGATAGTCTGTAT > 1:1371118/1‑50 ATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGA < 1:672025/50‑1 TTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAA > 1:2011317/1‑50 CACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATG > 1:92935/1‑50 ACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGT < 1:1973628/50‑1 CGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTT > 1:1692744/1‑50 GGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTC < 1:699881/50‑1 TCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGT < 1:2065473/50‑1 CGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGT > 1:197836/1‑49 GGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTT > 1:2137659/1‑49 GGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTT > 1:1435387/1‑49 GGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTT < 1:1486015/49‑1 GCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAA < 1:1359975/50‑1 CTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAA > 1:809119/1‑50 ATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGC > 1:243197/1‑49 CCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAA < 1:696155/49‑1 CGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAA < 1:252897/50‑1 CGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAA > 1:292473/1‑48 GGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAG > 1:1651567/1‑50 ATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCC > 1:1585079/1‑50 TCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCG < 1:1659159/50‑1 GATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCA > 1:1786725/1‑50 GATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGC < 1:438718/49‑1 ATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCAT > 1:1623585/1‑50 ATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCAT > 1:1392936/1‑50 TAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCAT > 1:1380178/1‑49 TTTCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/263465‑263513‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCAT > NC_000913/325411‑325458 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |