BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	565,055	Δ21,054 bp		[intD]–ompT	37 genes [intD], xisD, exoD, renD, insE‑3, insF‑3, renD, emrE, ylcJ, ybcK, ybcL, ybcM, ylcH, ybcN, ninE, ybcO, rusA, ylcG, ybcQ, nmpC, insH‑2, nmpC, essD, rrrD, rzpD, rzoD, borD, ybcV, ybcW, ylcI, nohD, aaaD, tfaD, ybcY, tfaX, appY, ompT

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	565055	586108	21054	24 [0]	[0] 27	[intD]–ompT	[intD],xisD,exoD,renD,insE‑3,insF‑3,renD,emrE,ylcJ,ybcK,ybcL,ybcM,ylcH,ybcN,ninE,ybcO,rusA,ylcG,ybcQ,nmpC,insH‑2,nmpC,essD,rrrD,rzpD,rzoD,borD,ybcV,ybcW,ylcI,nohD,aaaD,tfaD,ybcY,tfaX,appY,ompT

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 565054	0 (0.000)	24 (0.980)	20/88	0.1	100%	coding (925/1164 nt)	intD	DLP12 prophage; putative integrase
*	?	NC_000913	586109 =	0 (0.000)	24 (0.980)	20/88	0.1	100%	intergenic (‑476/+38)	ompT/envY	outer membrane protease VII (outer membrane protein 3b)/DNA‑binding transcriptional activator EnvY

GAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/565003‑565054

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCA  >  NC_000913/586109‑586152

GAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCT                                                >  1:950694/1‑50

 AATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCT                                                <  1:459495/49‑1

     AGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCT                                            <  1:157465/49‑1

      GCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCA                                          >  1:105650/1‑50

       CCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCAT                                         <  1:363015/50‑1

       CCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCAT                                         >  1:876789/1‑50

        CAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATT                                        >  1:900549/1‑50

        CAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATT                                        >  1:1719955/1‑50

         AGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATT                                        >  1:169162/1‑49

         AGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATT                                        >  1:566884/1‑49

           CTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTAT                                     <  1:246166/50‑1

            TTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATG                                    >  1:582263/1‑50

            TTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATG                                    >  1:168834/1‑50

              GCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCC                                  >  1:2105144/1‑50

              GCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCC                                  >  1:1357918/1‑50

                 CAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGT                               <  1:411308/50‑1

                            GAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTT                    >  1:244029/1‑50

                             AGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGT                      <  1:569987/47‑1

                               GTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCG                 <  1:802013/50‑1

                                TCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGC                >  1:407925/1‑50

                                   TGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTT             <  1:1547737/50‑1

                                     GAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTG            <  1:1116993/49‑1

                                      AAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCC          <  1:1039018/50‑1

                                          GGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTC      <  1:1053903/50‑1

                                           GAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCA     >  1:1820506/1‑50

                                              ATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCA  >  1:2300468/1‑50

GAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/565003‑565054

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCA  >  NC_000913/586109‑586152

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.