| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 603,467 | Δ5,885 bp | [ybdG]–insL‑2 | [ybdG], nfsB, ybdF, ybdJ, ybdK, sokE, hokE, insL‑2 | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 603467 | 609351 | 5885 | 25 [0] | [0] 25 | [ybdG]–insL‑2 | [ybdG],nfsB,ybdF,ybdJ,ybdK,sokE,hokE,insL‑2 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 603466 | 0 (0.000) | 24 (0.910) | 21/94 | 0.1 | 100% | coding (1198/1248 nt) | ybdG | miniconductance mechanosensitive channel YbdG |
| ? | NC_000913 | 609352 = | 0 (0.000) | intergenic (+175/+107) | insL‑2/entD | IS186/IS421 transposase/phosphopantetheinyl transferase EntD | |||||
CTGCTTAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/603419‑603466‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGC > NC_000913/609352‑609399 CTGCTTAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAG > 1:520326/1‑49CTGCTTAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAG > 1:29803/1‑49 GCTTAAATGAACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAA > 1:1234948/1‑50 CTTAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAAT < 1:1251518/50‑1 CTTAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAA < 1:2323688/49‑1 TTAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAATC > 1:523741/1‑50 AATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAATCCCC > 1:817346/1‑50 ATGCACCCACCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAATCCCCG < 1:562734/50‑1 ACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAATCCCCGCATA > 1:220799/1‑50 CCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAATCCCCGCATAT > 1:13379/1‑50 CCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAATCCCCGCATAT > 1:2023463/1‑50 CGCCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAATCCCCGCATATCC < 1:2184844/50‑1 GCCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAATCCCCGCATATCCG > 1:774322/1‑50 CCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAATCCCCGCATATCCGG < 1:1074223/50‑1 AGAGAGCGAATATCATTGCCGGTTGGCGAGTAATCCCCGCATATCCGGTT < 1:1008625/50‑1 CGAATATCATTGCCGGTTGGCGAGTAATCCCCGCATATCCGGTTGTCAGG > 1:696477/1‑50 AATATCATTGCCGGTTGGCGAGTAATCCCCGCATATCCGGTTGTCAGGT > 1:2249364/1‑49 ATATCATTGCCGGTTGGCGAGTAATCCCCGCATATCCGGTTGTCAGGT > 1:1480739/1‑48 ATTGCCGGTTGGCGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGAT < 1:294430/49‑1 ATTGCCGGTTGGCGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGAT < 1:218/49‑1 CGGTTGGCGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAG > 1:488782/1‑50 GGTTGGCGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGG < 1:108157/50‑1 GCGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCT < 1:1858446/50‑1 GCGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACC < 1:2247454/49‑1 GAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGC > 1:833138/1‑50 CTGCTTAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/603419‑603466‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGC > NC_000913/609352‑609399 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |