| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 687,860 | Δ1,185 bp | IS5‑mediated | insH‑3 | insH‑3 |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 687860 | 689044 | 1185 | 27 [0] | [0] 28 | insH‑3 | insH‑3 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 687859 | 0 (0.000) | 26 (0.970) | 20/96 | 0.1 | 100% | noncoding (1187/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 689045 = | 0 (0.000) | noncoding (1/1195 nt) | IS5 | repeat region | |||||
TTATCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/687810‑687859‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTTTT > NC_000913/689045‑689090 TTATCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGC < 1:327020/50‑1 GTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAG > 1:2277706/1‑50 CAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAAC < 1:617182/50‑1 CAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAAC < 1:276959/50‑1 CAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAAC < 1:1916129/50‑1 CAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAA < 1:480964/49‑1 CAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTA < 1:1049867/48‑1 CTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATT < 1:1903279/50‑1 TTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATT > 1:1212771/1‑48 ATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGT > 1:30090/1‑50 GTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTG > 1:1217692/1‑50 GTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTG > 1:2303092/1‑50 CAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCT < 1:1642562/50‑1 AGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTA < 1:595944/50‑1 AGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTA < 1:300165/50‑1 TTGCGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAAT < 1:988154/49‑1 GTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGT > 1:1493389/1‑49 TGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGA > 1:1615449/1‑49 TTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATAT > 1:1736294/1‑50 TTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGAT < 1:1612350/48‑1 TTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGAT < 1:306565/48‑1 TTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGAT < 1:1483255/48‑1 GGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTG < 1:426546/49‑1 GGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCT < 1:2187405/50‑1 GAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTG < 1:441427/50‑1 AGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTT < 1:2215987/50‑1 GTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTTTT < 1:560849/50‑1 TTATCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/687810‑687859‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTTTT > NC_000913/689045‑689090 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |