Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	997,868	Δ6,818 bp		[elfA]–ycbF	[elfA], elfD, elfC, elfG, ycbU, ycbV, ycbF

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	997868	1004685	6818	38 [0]	[0] 36	[elfA]–ycbF	[elfA],elfD,elfC,elfG,ycbU,ycbV,ycbF

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 997867	0 (0.000)	36 (1.310)	34/98	0.0	100%	intergenic (‑355/‑1)	ssuE/elfA	NADPH‑dependent FMN reductase/putative laminin‑binding fimbrial subunit
	?	NC_000913	1004686 =	0 (0.000)					intergenic (+29/‑82)	ycbF/pyrD	putative fimbrial chaperone YcbF/dihydroorotate dehydrogenase, type 2

TCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/997821‑997867 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACG  >  NC_000913/1004686‑1004732                                                                                                TCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTT                                              >  1:1408910/1‑50   ATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTG                                             <  1:417754/49‑1      TAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCG                                          <  1:409828/49‑1        AAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAG                                       <  1:1603264/50‑1           GCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGT                                     >  1:2148722/1‑49            CATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTC                                    >  1:2156109/1‑49              TTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAAT                                 >  1:1231549/1‑50              TTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAAT                                 <  1:1270049/50‑1                 TCATATTTACGAAGAGATCAGGTTGATAACGTTTGCCGCAGGTCAATTCC                              <  1:80343/50‑1                 TCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCC                              >  1:958530/1‑50                 TCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTC                               <  1:1642147/49‑1                   ATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCT                            <  1:649796/50‑1                   ATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCT                            >  1:1454083/1‑50                   ATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCT                            >  1:135686/1‑50                   ATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCC                             <  1:1466354/49‑1                    TATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTT                           >  1:1694886/1‑50                      TTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTT                         >  1:85508/1‑50                        TACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTG                        <  1:1502383/49‑1                        TACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTG                        <  1:2112877/49‑1                         ACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGG                       <  1:2307693/49‑1                          CGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTC                     >  1:1224653/1‑50                          CGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTC                     <  1:138054/50‑1                           GAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCC                    <  1:1899282/50‑1                            AAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCG                   <  1:1807166/50‑1                             AGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGA                  <  1:185211/50‑1                              GAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAA                 >  1:1860125/1‑50                                GATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACT               <  1:1477646/50‑1                                 ATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTC              >  1:1556688/1‑50                                  TCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCG             <  1:2182707/50‑1                                     GGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCA           >  1:1314551/1‑49                                       ATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACA         >  1:2120554/1‑49                                        TGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACAT        >  1:1793263/1‑49                                           TAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATA    >  1:224343/1‑50                                           TAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATA    <  1:13362/50‑1                                            AACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATAC   >  1:246937/1‑50                                             ACGTTTGCCGCAGGTCAATTCCCTTTCGGTCCGAACTCGCACATAATACG  <  1:1466477/50‑1                                                                                                TCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/997821‑997867 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACG  >  NC_000913/1004686‑1004732

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.