Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 1,040,502 Δ73,763 bp [appX]–[mdtG] 75 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1040502 1114264 73763 32 [0] [0] 34 [appX]–[mdtG] [appX],appA,etk,etp,gfcE,gfcD,gfcC,gfcB,gfcA,insA‑4,insB‑4,cspH,cspG,ymcF,ymcE,gnsA,yccM,torS,torT,torR,torC,torA,torD,cbpM,cbpA,yccE,agp,yccJ,wrbA,ymdF,rutG,rutF,rutE,rutD,rutC,rutB,rutA,rutR,putA,ymdG,putP,efeU,efeO,efeB,phoH,pgaD,pgaC,pgaB,pgaA,dgcT,insF‑4,insE‑4,ymdE,ycdU,serX,ghrA,ycdX,ycdY,ycdZ,csgG,csgF,csgE,csgD,csgB,csgA,csgC,ymdA,ymdB,clsC,opgC,opgG,opgH,yceK,msyB,[mdtG]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 10405010 (0.000)32 (1.190) 26/96 0.0 100% coding (57/93 nt) appX small protein AppX
?NC_000913 1114265 = 0 (0.000)coding (1226/1227 nt) mdtG efflux pump MdtG

TTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1040453‑1040501
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATGAA  >  NC_000913/1114265‑1114312
                                                                                                 
TTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTC                                                 <  1:207006/50‑1
  TACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAG                                               >  1:2075774/1‑50
  TACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCATTCA                                                <  1:926817/49‑1
   ACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGT                                              >  1:1523226/1‑50
   ACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGT                                              >  1:1674124/1‑50
    CTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTT                                             >  1:39743/1‑50
    CTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTT                                             <  1:2245286/50‑1
    CTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTT                                             >  1:1946380/1‑50
       TGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCG                                           <  1:2149549/49‑1
         GTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATA                                        >  1:824464/1‑50
            CGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCT                                     >  1:806411/1‑50
            CGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCT                                     >  1:6898/1‑50
            CGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCT                                     >  1:1761138/1‑50
             GTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTG                                    <  1:303639/50‑1
             GTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTG                                    <  1:1863985/50‑1
              TCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGG                                   <  1:2171611/50‑1
              TCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGG                                   >  1:2139040/1‑50
                GGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGG                                 >  1:1083153/1‑50
                   ATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTAT                              >  1:1927417/1‑50
                   ATTTTGTTGATGTGTTCGCTCTCCACCCTACAGTTCGATACCTGGGGTAT                              >  1:741895/1‑50
                     TTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTC                            >  1:1447131/1‑50
                       TGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGA                          >  1:1527715/1‑50
                           GATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGAC                      >  1:1254130/1‑50
                           GATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGA                       <  1:72081/49‑1
                               TGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACG                  >  1:1518565/1‑50
                                 TTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACG                  >  1:763480/1‑48
                                       CTCCACCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGT          >  1:68801/1‑50
                                            CCCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCAT     >  1:1294064/1‑50
                                             CCTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCAT     >  1:1273216/1‑49
                                              CTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATGA   <  1:554605/50‑1
                                              CTTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATG    >  1:1184798/1‑49
                                               TTCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATGAA  >  1:1451593/1‑50
                                                                                                 
TTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1040453‑1040501
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATGAA  >  NC_000913/1114265‑1114312

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.