| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,129,397 | Δ11,591 bp | flgN–flgL | flgN, flgM, flgA, flgB, flgC, flgD, flgE, flgF, flgG, flgH, flgI, flgJ, flgK, flgL | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1129397 | 1140987 | 11591 | 19 [0] | [0] 19 | flgN–flgL | flgN,flgM,flgA,flgB,flgC,flgD,flgE,flgF,flgG,flgH,flgI,flgJ,flgK,flgL |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1129396 | 0 (0.000) | 19 (0.690) | 15/98 | 0.4 | 100% | intergenic (+22/+18) | murJ/flgN | putative lipid II flippase MurJ/flagellar biosynthesis protein FlgN |
| ? | NC_000913 | 1140988 = | 0 (0.000) | intergenic (+2/+194) | flgL/rne | flagellar hook‑filament junction protein 2/ribonuclease E | |||||
GAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1129351‑1129396‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGC > NC_000913/1140988‑1141034 GAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCG < 1:161437/50‑1 ATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCT < 1:573342/50‑1 ATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCT < 1:2344287/50‑1 TGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTT < 1:1590036/49‑1 GCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTA < 1:1295096/49‑1 CCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAA < 1:990936/49‑1 CCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAA < 1:1475037/49‑1 CCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAA < 1:511918/50‑1 CCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACAT < 1:1039115/50‑1 GGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATAT > 1:1742858/1‑50 ACGGTGTAACAATGCATTCCGGCCTGTAGTGTTCGCTTTAAAACATATCA > 1:1170472/1‑50 GTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAA > 1:1909488/1‑50 ACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTG < 1:1547494/50‑1 ACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTG < 1:838498/50‑1 AATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGG > 1:2246636/1‑50 CGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTT < 1:980969/49‑1 CAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCT > 1:1823098/1‑50 GTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGC > 1:1655613/1‑50 GTGTTCGCTTTAAAACATATCATGAAACTGGGGATGTTTTGTCTGCCTGC > 1:1715803/1‑50 GAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1129351‑1129396‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGC > NC_000913/1140988‑1141034 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |