Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 2,846,301 Δ20,968 bp [hycE]–[rpoS] 21 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 2846301 2867268 20968 34 [0] [0] 34 [hycE]–[rpoS] [hycE],hycD,hycC,hycB,hycA,hypA,hypB,hypC,hypD,hypE,fhlA,ygbA,mutS,pphB,ygbI,ygbJ,ygbK,ygbL,ygbM,ygbN,[rpoS]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 28463000 (0.000)33 (1.280) 23/92 0.0 100% coding (172/1710 nt) hycE formate hydrogenlyase subunit HycE
?NC_000913 2867269 = 0 (0.000)coding (283/993 nt) rpoS RNA polymerase, sigma S (sigma 38) factor

GCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2846254‑2846300
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAA  >  NC_000913/2867269‑2867316
                                                                                               
GCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCA                                               >  1:2273209/1‑50
   TAATGACTATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCC                                            <  1:1142321/50‑1
    AATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCG                                           >  1:2077288/1‑50
    AATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCG                                           >  1:1273510/1‑50
      TGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGC                                         >  1:1543737/1‑50
      TGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGC                                         >  1:2124023/1‑50
      TGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGC                                         >  1:487148/1‑50
       GACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCG                                        >  1:897214/1‑50
       GACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCG                                        >  1:1142253/1‑50
       GACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCG                                        >  1:1501231/1‑50
        ACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCG                                        <  1:1418153/49‑1
         CCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGC                                      <  1:2080226/50‑1
         CCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGC                                      >  1:2063789/1‑50
          CATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGC                                      >  1:1363712/1‑49
            TTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGC                                      >  1:2134731/1‑47
              CAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGA                                  <  1:2248/49‑1
               AGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGG                                >  1:696631/1‑50
                 TTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGC                               >  1:1260213/1‑49
                    GCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACA                           >  1:1790519/1‑50
                     CGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACAT                          >  1:1748406/1‑50
                     CGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACAT                          >  1:1423672/1‑50
                     CGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACA                           <  1:1802844/49‑1
                      GTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATC                         >  1:675862/1‑50
                           TCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCAC                    <  1:2065152/50‑1
                             GTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACG                   >  1:435017/1‑49
                             GTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACG                   >  1:1389141/1‑49
                                 CCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGT               <  1:1497805/49‑1
                                   AAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCG            <  1:1894389/50‑1
                                   AAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCG            >  1:1085005/1‑50
                                   AAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCG            >  1:1522203/1‑50
                                   AAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCG            <  1:1442547/50‑1
                                   AAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCG            <  1:112148/50‑1
                                      CAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGA         <  1:2276342/50‑1
                                              ATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAA  >  1:1085803/1‑49
                                                                                               
GCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2846254‑2846300
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAA  >  NC_000913/2867269‑2867316

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.