| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,090,347 | Δ708 bp | coding (1‑708/708 nt) | endA → | DNA‑specific endonuclease I |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3090347 | 3091054 | 708 | 27 [0] | [0] 28 | endA | DNA‑specific endonuclease I |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3090346 | 0 (0.000) | 27 (0.980) | 22/98 | 0.1 | 100% | intergenic (+94/‑1) | yggI/endA | conserved protein YggI/DNA‑specific endonuclease I |
| ? | NC_000913 | 3091055 = | 0 (0.000) | intergenic (+1/‑79) | endA/rsmE | DNA‑specific endonuclease I/16S rRNA m(3)U1498 methyltransferase | |||||
AAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3090299‑3090346‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAA > NC_000913/3091055‑3091102 AAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGCCT < 1:1317324/50‑1 AACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGCCTAC < 1:240856/50‑1 AGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGCCTACACT < 1:1457386/50‑1 CGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGCCTACACTAGCGG > 1:802774/1‑49 GCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGCCTACACTAGCGGGA > 1:1778218/1‑50 GCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGCCTACACTAGCGGGA > 1:1799658/1‑50 CTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGCCTACACTAGCGGGAT < 1:2124106/50‑1 TACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGCCTACACTAGCGGGATT > 1:457157/1‑50 TACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGCCTACACTAGCGGGATT > 1:1248880/1‑50 TACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGCCTACACTAGCGGGATT > 1:344693/1‑50 ACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGCCTACACTAGCGGGATTC > 1:1339468/1‑50 CGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGCCTACACTAGCGGGATTCT < 1:2062400/50‑1 GGCTCGTTTTAACACGGAG‑AAGTGCCTACACTAGCGGGATTCTTTTTGT > 1:346155/1‑49 GGCTCGTTTTAACACGGAG‑AAGTGCCTACACTAGCGGGATTCTTTTTGT > 1:1405513/1‑49 CTCGTTTTAACACGGAG‑AAGTGCCTACACTAGCGGGATTCTTTTTGTTAA < 1:1103962/50‑1 CTCGTTTTAACACGGAG‑AAGTGCCTACACTAGCGGGATTCTTTTTGTTAA > 1:120382/1‑50 GTTTTAACACGGAG‑AAGTGCCTACACTAGCGGGATTCTTTTTGTTAACCC > 1:1660609/1‑50 GTTTTAACACGGAG‑AAGTGCCTACACTAGCGGGATTCTTTTTGTTAACCC > 1:10107/1‑50 TTTTAACACGGAG‑AAGTGCCTACACTAGCGGGATTCTTTTTGTTAACCCC < 1:318094/50‑1 TAACACGGAG‑AAGTGCCTACACTAGCGGGATTCTTTTTGTTAACCCCTAC > 1:1122285/1‑50 ACACGGAG‑AAGTGCCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCC < 1:1408156/50‑1 ACACGGAG‑AAGTGCCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCC > 1:861079/1‑50 ACACGGAG‑AAGTGCCTACACTAGCGGGATTCTTTTTGTTAACCCCTACC < 1:280129/49‑1 ACGGAG‑AAGTGCCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCA > 1:322586/1‑50 ACGGAG‑AAGTGCCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCA < 1:1355473/50‑1 AGTGCCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTAC < 1:1766512/50‑1 TGCCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAA > 1:775545/1‑50 AAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3090299‑3090346‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAA > NC_000913/3091055‑3091102 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |