| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,184,782 | Δ6,916 bp | ubiK–yqiI | ubiK, ygiL, yqiG, insC‑5, insD‑5, yqiG, yqiH, yqiI | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3184782 | 3191697 | 6916 | 41 [0] | [0] 40 | ubiK–yqiI | ubiK,ygiL,yqiG,insC‑5,insD‑5,yqiG,yqiH,yqiI |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3184781 | 0 (0.000) | 40 (1.490) | 31/96 | 0.0 | 100% | intergenic (‑315/‑59) | ribB/ubiK | 3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/ubiquinone biosynthesis accessory factor UbiK |
| ? | NC_000913 | 3191698 = | 0 (0.000) | intergenic (+2/+41) | yqiI/glgS | putative fimbrial protein YqiI/surface composition regulator | |||||
CGCTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3184732‑3184781‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGT > NC_000913/3191698‑3191743 CGCTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTAT < 1:1793394/50‑1 CTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATAT > 1:1780534/1‑50 TAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATC > 1:1975522/1‑50 ATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCT > 1:544700/1‑49 ATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCT > 1:1237733/1‑49 ATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCT > 1:233880/1‑49 GATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAA > 1:1934675/1‑49 ATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATA > 1:1893321/1‑50 ATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATA < 1:1558355/50‑1 ATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAAT < 1:1966845/49‑1 GGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACA > 1:1756145/1‑50 GCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACAC < 1:1894498/50‑1 GCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACAC < 1:1606692/50‑1 GCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACAC > 1:2290354/1‑50 CAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACT < 1:737625/50‑1 AGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTA < 1:221349/50‑1 CAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAA < 1:2020720/50‑1 CAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAA < 1:1037502/50‑1 cCGCATAGCTTCACATAATTCTGGTTTATATCTAATACAACCACTAAAAC > 1:1764296/2‑50 GCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGG > 1:1180005/1‑50 CATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGG < 1:146392/50‑1 ATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGC > 1:2038699/1‑50 ATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGC < 1:1948662/50‑1 TAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCC < 1:435524/50‑1 TAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCC < 1:1108356/50‑1 GCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCA < 1:711760/49‑1 GCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCA < 1:1058700/49‑1 TTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCAT > 1:1136364/1‑48 TTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCAT > 1:99656/1‑48 CACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAG < 1:1268471/49‑1 CACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAG < 1:1105076/49‑1 ACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGC > 1:1856282/1‑50 ACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGC < 1:390826/50‑1 TAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCG > 1:1733199/1‑50 AATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGT > 1:744380/1‑50 ATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGT > 1:1999971/1‑49 ATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGT < 1:1083564/49‑1 CTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATA > 1:1687613/1‑50 TGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATAT > 1:187748/1‑50 GGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATAT > 1:322514/1‑49 TTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGT > 1:402830/1‑50 CGCTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3184732‑3184781‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGT > NC_000913/3191698‑3191743 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |