| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,453,928 | Δ15,926 bp | gspA–[chiA] | 16 genes gspA, gspC, gspD, gspE, gspF, gspG, gspH, gspI, gspJ, gspK, gspL, gspM, gspO, bfr, bfd, [chiA] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3453928 | 3469853 | 15926 | 37 [0] | [0] 37 | gspA–[chiA] | gspA,gspC,gspD,gspE,gspF,gspG,gspH,gspI,gspJ,gspK,gspL,gspM,gspO,bfr,bfd,[chiA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3453927 | 0 (0.000) | 36 (1.400) | 29/92 | 0.0 | 100% | coding (1/420 nt) | gspB | putative general secretion pathway protein B |
| ? | NC_000913 | 3469854 = | 0 (0.000) | intergenic (‑1/+291) | chiA/tufA | endochitinase/translation elongation factor Tu 1 | |||||
AGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3453877‑3453927‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACG > NC_000913/3469854‑3469897 AGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACA > 1:1791885/1‑50 GGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT > 1:1792056/1‑49 GTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTA > 1:1594585/1‑50 TGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTAT < 1:176534/50‑1 GACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTAT > 1:1873252/1‑49 GACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTAT > 1:70148/1‑49 ACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATA < 1:447634/49‑1 CTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATC < 1:1011585/50‑1 TTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCT < 1:1538827/50‑1 TTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGT > 1:643227/1‑49 TTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGA > 1:2215199/1‑50 TCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGA < 1:2094081/49‑1 TCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTG < 1:2275748/48‑1 TCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTG < 1:1175803/48‑1 CTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGAC < 1:2268726/49‑1 CTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGAC < 1:1983365/49‑1 CTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTA > 1:483270/1‑49 ACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAA < 1:1480061/49‑1 GCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACT < 1:316553/50‑1 CGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTG > 1:2006393/1‑50 GCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTG > 1:1281689/1‑49 GGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCA > 1:1219782/1‑49 GCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAA > 1:376800/1‑49 CGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAA > 1:1614996/1‑50 CGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAA < 1:805932/50‑1 GATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAA > 1:1848367/1‑49 GATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAA > 1:909029/1‑49 GATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAA > 1:1558906/1‑49 ATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAAC > 1:607072/1‑49 ATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAAC > 1:1912379/1‑49 TATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAA < 1:1348823/50‑1 TAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAA < 1:425307/49‑1 TAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAA < 1:2345647/49‑1 GAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGT < 1:2332749/50‑1 GAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAG < 1:587386/49‑1 ATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCC > 1:284172/1‑50 AAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTAC < 1:1458122/49‑1 ACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACG > 1:1222892/1‑48 AGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3453877‑3453927‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACG > NC_000913/3469854‑3469897 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |