Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 4,555,491 Δ41,523 bp [yjiC]–lgoD 37 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 4555491 4597013 41523 31 [0] [0] 30 [yjiC]–lgoD [yjiC],ytiC,ytiD,idlP,iraD,hypT,iadA,yjiG,yjiH,kptA,yjiJ,yjiK,ytiA,yjiL,yjiM,yjiN,mdtM,rpnD,yjiR,yjiS,yjiT,yjiV,mcrC,mcrB,symE,symR,hsdS,hsdM,hsdR,mrr,yjiA,yjiX,btsT,tsr,lgoT,lgoR,lgoD

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 45554900 (0.000)28 (1.040) 25/96 0.0 100% coding (831/831 nt) yjiC uncharacterized protein YjiC
?NC_000913 4597014 = 0 (0.000)intergenic (+2/+136) lgoD/opgB L‑galactonate oxidoreductase/phosphoglycerol transferase I

TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4555442‑4555490
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGC  >  NC_000913/4597014‑4597062
                                                                                                  
TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTA                                                  <  1:2058283/50‑1
TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT                                                   >  1:482736/1‑49
      TATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGC                                              >  1:1013488/1‑48
      TATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGC                                              >  1:217326/1‑48
        TCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGC                                              >  1:439120/1‑46
        TCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGC                                              >  1:370602/1‑46
           GTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTA                                       >  1:853336/1‑50
            TATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTAT                                      <  1:1716109/50‑1
            TATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTAT                                      <  1:1991396/50‑1
            TATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTA                                       <  1:1545504/49‑1
              TAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATT                                     <  1:1949419/49‑1
                ACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTA                                    >  1:2107294/1‑48
                 CCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAG                                 <  1:47442/50‑1
                  CTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGT                                <  1:1037026/50‑1
                  CTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGT                                >  1:814070/1‑50
                   TGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTT                               >  1:238335/1‑50
                     AATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTT                               <  1:60769/48‑1
                      ATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGC                             >  1:1773115/1‑49
                         TTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATG                         <  1:255806/50‑1
                           AGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGC                        <  1:1566530/49‑1
                            GTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAG                      >  1:156307/1‑50
                              ACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCG                    >  1:2183740/1‑50
                                  ATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCG                >  1:598360/1‑50
                                     CTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGG              <  1:807952/49‑1
                                      TTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGG             >  1:1542210/1‑49
                                        CCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAA           <  1:817732/49‑1
                                          TGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTG        >  1:27314/1‑50
                                               GTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGG   <  1:1051891/50‑1
                                               GTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGG    <  1:744089/49‑1
                                                TAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGC  <  1:1684591/50‑1
                                                TAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGC  >  1:599769/1‑50
                                                                                                  
TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4555442‑4555490
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGC  >  NC_000913/4597014‑4597062

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.