| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,509,562 | Δ46,201 bp | [hicB]–maeA | 43 genes [hicB], ydcR, ydcS, ydcT, ydcU, ydcV, patD, yncL, ortT, ydcY, ydcZ, mnaT, curA, mcbR, yncD, yncE, ansP, yncG, yncH, rhsE, ydcD, yncO, yncI, ydcC, pptA, yddH, nhoA, yddE, narV, narW, narY, narZ, narU, yddJ, yddK, yddL, yddG, fdnG, fdnH, fdnI, yddM, adhP, maeA |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1509562 | 1555762 | 46201 | 24 [0] | [0] 22 | [hicB]–maeA | [hicB],ydcR,ydcS,ydcT,ydcU,ydcV,patD,yncL,ortT,ydcY,ydcZ,mnaT,curA,mcbR,yncD,yncE,ansP,yncG,yncH,rhsE,ydcD,yncO,yncI,ydcC,pptA,yddH,nhoA,yddE,narV,narW,narY,narZ,narU,yddJ,yddK,yddL,yddG,fdnG,fdnH,fdnI,yddM,adhP,maeA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1509561 | 0 (0.000) | 22 (0.800) | 20/98 | 0.1 | 100% | coding (54/417 nt) | hicB | antitoxin of the HicA‑HicB toxin‑antitoxin system |
| ? | NC_000913 | 1555763 = | 0 (0.000) | intergenic (‑94/+63) | maeA/sra | malate dehydrogenase, NAD‑requiring/30S ribosomal subunit protein S22 | |||||
CGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGATAAAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATTGAG > NC_000913/1555714‑1555809 | ttatcccgtcactcttacacccgcgccggaaggcggttatatggtttcta < 1:682783‑M2/1‑1 (MQ=255) tcccgtcactcttacacccgcgccggaaggcggttatatggtttctaaa > 1:1353502‑M2/47‑49 (MQ=255) cgtcactcttacacccgcgccggaaggcggttatatggtttctAAACaa > 1:799735‑M2/44‑49 (MQ=255) cttacacccgcgccggaaggcggttatatggtttctAAACAAAAACACCa > 1:2034098‑M2/37‑50 (MQ=255) acacccgcgccggaaggcggttatatggtttctAAACAAAAACACCAtt < 1:1016139‑M2/16‑1 (MQ=255) cacccgcgccggaaggcggttatatggtttctAAACAAAAACACCATTg < 1:485528‑M2/17‑1 (MQ=255) cacccgcgccggaaggcggttatatggtttctAAACAAAAACACCATTg < 1:235608‑M2/17‑1 (MQ=255) ccgcgccggaaggcggttatatggtttctAAACAAAAACACCATTgcg > 1:2220214‑M2/30‑48 (MQ=255) cgcgccggaaggcggttatatggtttctAAACAAAAACACCATTGCGCAg < 1:938313‑M2/22‑1 (MQ=255) cgccggaaggcggttatatggtttctAAACAAAAACACCATTGCGCAGGc < 1:1354443‑M2/24‑1 (MQ=255) ggaaggcggttatatggtttctAAACAAAAACACCATTGCGCAGGCAATg > 1:1626234‑M2/23‑50 (MQ=255) ggaaggcggttatatggtttctAAACAAAAACACCATTGCGCAGGCAATg > 1:712099‑M2/23‑50 (MQ=255) aaggcggttatatggtttctAAACAAAAACACCATTGCGCAGGCAATGgt > 1:1162166‑M2/21‑50 (MQ=255) cggttatatggtttctAAACAAAAACACCATTGCGCAGGCAATGGTGtt > 1:354406‑M2/17‑49 (MQ=255) ggttatatggtttctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTa < 1:673916‑M2/35‑1 (MQ=255) gttatatggtttctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTaa < 1:1769953‑M2/36‑1 (MQ=255) atatggtttctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATc < 1:429079‑M2/38‑1 (MQ=255) atatggtttctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCg > 1:2245‑M2/12‑50 (MQ=255) tatggtttctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGt > 1:1074401‑M2/11‑50 (MQ=255) gtttctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCAt < 1:1346414‑M2/43‑1 (MQ=255) tctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATTGAg > 1:1765823‑M2/4‑50 (MQ=255) ctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATTGAg > 1:2104832‑M2/3‑49 (MQ=255) | CGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGATAAAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATTGAG > NC_000913/1555714‑1555809 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |