mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 52 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 224,759 | 0 | T | C | 59.0% | ‑2.0 / 44.3 | 39 | noncoding (989/1542 nt) | rrsH | 16S ribosomal RNA |
| * | NC_000913 | 224,771 | 0 | C | G | 57.8% | ‑2.9 / 64.2 | 45 | noncoding (1001/1542 nt) | rrsH | 16S ribosomal RNA |
| * | NC_000913 | 224,768 | 0 | C | A | 56.5% | 15.1 / 77.4 | 46 | noncoding (998/1542 nt) | rrsH | 16S ribosomal RNA |
| * | NC_000913 | 224,813 | 0 | G | T | 48.4% | 25.2 / 44.3 | 31 | noncoding (1043/1542 nt) | rrsH | 16S ribosomal RNA |
| * | NC_000913 | 224,809 | 0 | G | C | 47.1% | 25.6 / 55.2 | 34 | noncoding (1039/1542 nt) | rrsH | 16S ribosomal RNA |
| * | NC_000913 | 2,029,274 | 0 | C | T | 39.3% | 33.2 / 12.1 | 28 | K31K (AAG→AAA) | yedI | conserved inner membrane protein YedI |
| * | NC_000913 | 624,589 | 0 | T | C | 35.7% | 23.2 / 26.1 | 28 | intergenic (‑79/‑296) | fepB/entC | ferric enterobactin ABC transporter periplasmic binding protein/isochorismate synthase EntC |
| * | NC_000913 | 4,296,060 | 0 | C | T | 35.2% | 59.3 / 53.7 | 54 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 4,271,379 | 0 | T | C | 33.3% | 19.5 / 16.5 | 21 | S831S (TCA→TCG) | uvrA | excision nuclease subunit A |
| * | NC_000913 | 4,271,376 | 0 | G | T | 31.8% | 35.8 / 16.0 | 22 | G832G (GGC→GGA) | uvrA | excision nuclease subunit A |
| * | NC_000913 | 4,271,382 | 0 | A | C | 31.8% | 23.0 / 19.7 | 22 | L830L (CTT→CTG) | uvrA | excision nuclease subunit A |
| * | NC_000913 | 3,473,344 | 0 | C | T | 31.6% | 22.9 / 12.2 | 19 | Q57Q (CAG→CAA) | fusA | elongation factor G |
| * | NC_000913 | 3,473,350 | 0 | C | T | 31.6% | 23.1 / 11.7 | 19 | Q55Q (CAG→CAA) | fusA | elongation factor G |
| * | NC_000913 | 3,473,353 | 0 | C | T | 31.6% | 22.6 / 12.4 | 19 | E54E (GAG→GAA) | fusA | elongation factor G |
| * | NC_000913 | 1,271,827 | 0 | A | T | 31.2% | 61.0 / 11.1 | 32 | V8E (GTA→GAA) | chaA | Na(+)/K(+):H(+) antiporter ChaA |
| * | NC_000913 | 4,271,358 | 0 | C | T | 30.0% | 26.8 / 11.9 | 20 | V838V (GTG→GTA) | uvrA | excision nuclease subunit A |
| * | NC_000913 | 4,271,361 | 0 | G | C | 30.0% | 31.1 / 15.3 | 20 | R837R (CGC→CGG) | uvrA | excision nuclease subunit A |
| * | NC_000913 | 4,271,364 | 0 | C | T | 30.0% | 24.9 / 12.7 | 20 | Q836Q (CAG→CAA) | uvrA | excision nuclease subunit A |
| * | NC_000913 | 4,271,355 | 0 | C | T | 28.6% | 30.9 / 11.9 | 21 | K839K (AAG→AAA) | uvrA | excision nuclease subunit A |
| * | NC_000913 | 32,613 | 0 | T | G | 26.9% | 37.5 / 19.9 | 26 | V599V (GTT→GTG) | carB | carbamoyl phosphate synthetase subunit beta |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 294906 | 0 (0.000) | 3 (0.150) +CAATCATAGAAA |
3/74 | 2.2 | 18.6% | intergenic (‑107/+12) | yagM/ykgV | CP4‑6 prophage; protein YagM/protein YkgV |
| ? | NC_000913 | = 1166074 | 35 (1.280) | intergenic (+389/‑11) | ycfP/ndh | UPF0227 protein YcfP/NADH:quinone oxidoreductase II | |||||