| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,801,078 | (T)7→6 | coding (922/1017 nt) | waaJ ← | UDP‑glucose:(glucosyl)LPS alpha‑1,2‑glucosyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,801,072 | 0 | T | . | 100.0% | 81.7 / NA | 20 | coding (928/1017 nt) | waaJ | UDP‑glucose:(glucosyl)LPS alpha‑1,2‑glucosyltransferase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (10/10); total (10/10) | |||||||||||
CTATAATTCCTGAGATATAATGATGTTGCACTAAAAGATGTTTATATCTTTTTTTAAATTCAATAATTGATTTCGCATCTCGTGGAGAGTCA > NC_000913/3801024‑3801115 | cTATAATTCCTGAGATATAATGATGTTGCACTAAAAGATGTTTATATCt < 1:149852/49‑1 (MQ=255) taATTCCTGAGATATAATGATGTTGCACTAAAAGATGTTTATATCtttt > 1:1366246/1‑49 (MQ=255) aTTCCTGAGATATAATGATGTTGCACTAAAAGATGTTTATATCtttttt < 1:1500266/49‑1 (MQ=255) aTTCCTGAGATATAATGATGTTGCACTAAAAGATGTTTATATCttttt > 1:202668/1‑48 (MQ=255) tCCTGAGATATAATGATGTTGCACTAAAAGATGTTTATATCtttttta > 1:1816857/1‑47 (MQ=255) agaTATAATGATGTTGCACTAAAAGATGTTTATATC‑TTTTTTAAAtt < 1:1933294/47‑1 (MQ=39) agaTATAATGATGTTGCACTAAAAGATGTTTATATC‑TTTTTTAAATTc < 1:623924/48‑1 (MQ=39) atatAATGATGTTGCACTAAAAGATGTTTATATC‑TTTTTTAAATTCgat < 1:2250614/49‑1 (MQ=38) atatAATGATGTTGCACTAAAAGATGTTTATATC‑TTTTTTAAATTCaat < 1:2250558/49‑1 (MQ=39) atatAATGATGTTGCACTAAAAGATGTTTATATC‑TTTTTTAAATTCaa > 1:795111/1‑48 (MQ=39) tataATGATGTTGCACTAAAAGATGTTTATATC‑TTTTTTAAATTCaat > 1:1010652/1‑48 (MQ=39) taATGATGTTGCACTAAAAGATGTTTATATC‑TTTTTTAAATTCaataa < 1:1493840/48‑1 (MQ=39) aaTGATGTTGCACTAAAAGATGTTTATATC‑TTTTTTAAATTCAATAAtt > 1:1153626/1‑49 (MQ=39) atgatgTTGCACTAAAAGATGTTTATATC‑TTTTTTAAATTCAATAAtt < 1:14586/48‑1 (MQ=39) tgatgTTGCACTAAAAGATGTTTATATC‑TTTTTTAAATTCAATAATTGa > 1:64052/1‑49 (MQ=39) atgTTGCACTAAAAGATGTTTATATC‑TTTTTTAAATTCAATAATTGAt < 1:959960/48‑1 (MQ=39) atgTTGCACTAAAAGATGTTTATATC‑TTTTTTAAATTCAATAATTGAt < 1:1918247/48‑1 (MQ=39) tAAAAGATGTTTATATC‑TTTTTTAAATTCAATAATTGATTTCGCAtctc > 1:84289/1‑49 (MQ=39) aaaGATGTTTATATC‑TTTTTTAAATTCAATAATTGATTTCGCAtctc < 1:55482/47‑1 (MQ=39) aaaGATGTTTATATC‑TTTTTTAAATTCAATAATTGATTTCGCATCTCGt < 1:872739/49‑1 (MQ=39) aTGTTTATATC‑TTTTTTAAATTCAATAATTGATTTCGCATCTCGTg > 1:412869/1‑46 (MQ=39) tGTTTATATC‑TTTTTTAAATTCAATAATTGATTTCGCATCTCGTGga > 1:1634093/1‑47 (MQ=39) tGTTTATATC‑TTTTTTAAATTCAATAATTGATTTCGCATCTCGTGga > 1:1092718/1‑47 (MQ=39) ttATATC‑TTTTTTAAATTCAATAATTGATTTCGCATCTCGTGGAGAGt > 1:2108210/1‑48 (MQ=39) tataTC‑TTTTTTAAATTCAATAATTGATTTCGCATCTCGTGGAGAGTCa > 1:1244060/1‑49 (MQ=39) | CTATAATTCCTGAGATATAATGATGTTGCACTAAAAGATGTTTATATCTTTTTTTAAATTCAATAATTGATTTCGCATCTCGTGGAGAGTCA > NC_000913/3801024‑3801115 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |