| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,948,805 | (G)6→7 | coding (1165/1521 nt) | yifB ← | putative magnesium chelatase YifB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,948,799 | 1 | . | G | 97.8% | 170.3 / ‑2.5 | 45 | coding (1171/1521 nt) | yifB | putative magnesium chelatase YifB |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base G (17/27); total (17/28) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.52e-01 | |||||||||||
AACGGTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGTC > NC_000913/3948752‑3948841 | aaCGGTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGcc < 1:1904836/48‑1 (MQ=255) aCGGTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑g < 1:581062/48‑1 (MQ=255) ggTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑gggg > 1:1590516/1‑49 (MQ=255) ctTTCTCCCGGCACTACCGTTTTACTCAAAATGCCGGGGGGGTGGTAAt < 1:2010947/49‑1 (MQ=255) ctTTCTCCCGGCACTACCGTTTTACTCAAAATGCCGGGGGGGTGGTAAt < 1:1425079/49‑1 (MQ=255) ctTTCTCCCGGCACTACCGTTTTACTCAAAATGCCGGGGGGGTGGTAAt < 1:1163484/49‑1 (MQ=255) tttCTCCCGGCACTACCGTTTTACTCAAAATGCCGGGGGGGTGGTAATg > 1:1486110/1‑49 (MQ=255) tttCTCCCGGCACTACCGTTTTACTCAAAATGCCGGGGGGGTGGTAATg > 1:963622/1‑49 (MQ=255) tctcCCGGCACTACCGTTTTACTCAAAATGCCGGGGGGGTGGTAATgg < 1:672726/48‑1 (MQ=255) ctcCCGGCACTACCGTTTTACTCAAAATGCCGGGGGGGTGGTAATggg < 1:969194/48‑1 (MQ=255) ccGGCACTACCGTTTTACTCAAAATGCCGGGGGGGTGGTAATGGGAtct < 1:594416/49‑1 (MQ=255) ccGGCACTACCGTTTTACTCAAAATGCCGGGGGGGTGGTAATGGGAtc < 1:486959/48‑1 (MQ=255) ccGGCACTACCGTTTTACTCAAAATGCCGGGGGGGTGGTAATGGGAt < 1:1920003/47‑1 (MQ=255) ccGGCACTACCGTTTTACTCAAAATGCCGGGGGGGTGGTAATGGGAt < 1:2320709/47‑1 (MQ=255) cGGCACTACCGTTTTACTCAAAATGCCGGGGGGGTGGTAATGGGAtctc > 1:477604/1‑49 (MQ=255) cGGCACTACCGTTTTACTCAAAATGCCGGGGGGGTGGTAATGGGAtctc < 1:848/49‑1 (MQ=255) ggCACTACCGTTTTACTCAAAATGCCGGGGGGGTGGTAATGGGAtctc > 1:2260958/1‑48 (MQ=255) aCTACCGTTTTACTCAAAATGCCGGGGGGGTGGTAATGGGATCTCCAGt < 1:1857499/49‑1 (MQ=255) aCTACCGTTTTACTCAAAATGCCGGGGGGGTGGTAATGGGATCTCCAGt < 1:67645/49‑1 (MQ=255) aCTACCGTTTTACTCAAAATGCCGGGGGGGTGGTAATGGGATCTCCAGt > 1:198982/1‑49 (MQ=255) tACCGTTTTACTCAAAATGCCGGGGGGGTGGTAATGGGATCTCCAGt > 1:368094/1‑47 (MQ=255) ccGTTTTACTCAAAATGCCGGGGGGGTGGTAATGGGATCTCCAGTgaga < 1:1069782/49‑1 (MQ=255) ccGTTTTACTCAAAATGCCGGGGGGGTGGTAATGGGATCTCCAGTgaga < 1:200983/49‑1 (MQ=255) ccGTTTTACTCAAAATGCCGGGGGGGTGGTAATGGGATCTCCAGTga < 1:664939/47‑1 (MQ=255) ccGTTTTACTCAAAATGCCGGGGGGGTGGTAATGGGATCTCCAGTga > 1:1600770/1‑47 (MQ=255) gTTTTACTCAAAATGCCGGGGGGGTGGTAATGGGATCTCCAGTga > 1:626411/1‑45 (MQ=255) ttttACTCAAAATGCCGGGGGGGTGGTAATGGGATCTCCAGTga > 1:1191918/1‑44 (MQ=255) ttttACTCAAAATGCCGGGGGGGTGGTAATGGGATCTCCAGTga > 1:752362/1‑44 (MQ=255) ttttACTCAAAATGCCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGAt < 1:2021396/49‑1 (MQ=255) ttttACTCAAAATGCCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGAt < 1:1581428/49‑1 (MQ=255) ttACTCAAAATGCCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATc > 1:1843333/1‑48 (MQ=255) ttACTCAAAATGCCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATc < 1:1736259/48‑1 (MQ=255) tACTCAAAATGCCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATCg > 1:2000968/1‑48 (MQ=255) aCTCAAAATGCCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATCg > 1:832651/1‑47 (MQ=255) cTCAAAATGCCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGaa < 1:389564/48‑1 (MQ=255) cTCAAAATGCCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGaa < 1:2288019/48‑1 (MQ=255) cTCAAAATGCCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAg < 1:1158594/49‑1 (MQ=255) cTCAAAATGCCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAg < 1:328867/49‑1 (MQ=255) tCAAAATGCCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGc > 1:1721063/1‑49 (MQ=255) aaaaTGCCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGc < 1:47809/47‑1 (MQ=255) aaaaTGCCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGc < 1:88014/47‑1 (MQ=255) aaaaTGCCGGGGGGGTGGAAATGGGATCTCCAGTGAGAGATCGAAGCgg > 1:1381612/1‑49 (MQ=255) aaaTGCCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGt < 1:1269592/49‑1 (MQ=255) aaaTGCCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGt < 1:2142473/49‑1 (MQ=255) aaaTGCCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGt < 1:1707984/49‑1 (MQ=255) aaaTGCCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGt > 1:101261/1‑49 (MQ=255) aaaTGCC‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGTc < 1:750315/49‑1 (MQ=255) aTGCCGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGTc > 1:2283511/1‑48 (MQ=255) | AACGGTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGTC > NC_000913/3948752‑3948841 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |