| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,980,957 | (G)6→7 | coding (71/1386 nt) | yifK → | putative transporter YifK |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,980,951 | 1 | . | G | 97.2% | 135.2 / ‑2.5 | 36 | coding (65/1386 nt) | yifK | putative transporter YifK |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base G (23/12); total (24/12) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.32e-01 | |||||||||||
CAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑GGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGT > NC_000913/3980903‑3980994 | cAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCt < 1:1265920/49‑1 (MQ=255)cAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCt < 1:1272026/49‑1 (MQ=255) agagCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑g > 1:2167796/1‑49 (MQ=255) agagCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑g > 1:199553/1‑49 (MQ=255) gCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑gggg > 1:2084555/1‑49 (MQ=255) gCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑gggg < 1:772234/49‑1 (MQ=255) tACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑gggggg > 1:935400/1‑49 (MQ=255) aCAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑ggggggg > 1:1390131/1‑48 (MQ=255) gTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCa > 1:127504/1‑49 (MQ=39) gggCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCAtt > 1:2266959/1‑49 (MQ=39) gggCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCAtt > 1:905910/1‑49 (MQ=39) ggCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTg > 1:1011542/1‑49 (MQ=39) ggCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTg > 1:1168413/1‑49 (MQ=39) gCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTgg > 1:244327/1‑49 (MQ=39) cTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGc > 1:1568914/1‑49 (MQ=255) tGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCg > 1:378706/1‑49 (MQ=255) tGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCg > 1:1237418/1‑49 (MQ=255) ggAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGt > 1:1585665/1‑49 (MQ=255) ggAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGt > 1:207570/1‑49 (MQ=255) gAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGt < 1:917027/48‑1 (MQ=255) gAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTc < 1:1287729/49‑1 (MQ=255) aaGCTCGACATATCGAACTCATCGCCCT‑GGGGGGCACCATTGGCGTCgg > 1:65256/1‑49 (MQ=255) gCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGc < 1:1353890/49‑1 (MQ=39) tCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCt > 1:378888/1‑49 (MQ=39) aCATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCTTGtt > 1:893881/1‑49 (MQ=38) aCATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGtt < 1:1404821/49‑1 (MQ=39) cATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGttt < 1:1812073/49‑1 (MQ=39) atatCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTa > 1:956624/1‑49 (MQ=39) tatCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTAt > 1:1007122/1‑49 (MQ=39) atCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATg > 1:1978130/1‑49 (MQ=39) tCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATg < 1:2070445/48‑1 (MQ=39) gAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATgggg > 1:413186/1‑49 (MQ=39) aaCTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATggggg < 1:1435557/49‑1 (MQ=39) aCTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGgc > 1:2262861/1‑49 (MQ=39) aCTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGgc < 1:1638520/49‑1 (MQ=39) aCTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGgc < 1:1085800/49‑1 (MQ=39) tCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGgccg > 1:1761356/1‑49 (MQ=39) cATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGgccgc > 1:1868281/1‑49 (MQ=39) aTCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGgccgcc < 1:27793/49‑1 (MQ=39) aTCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGgccgcc < 1:1645764/49‑1 (MQ=39) aTCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGgccgc > 1:2181191/1‑48 (MQ=39) aTCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGgccgc > 1:28769/1‑48 (MQ=39) aTCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGgccgc > 1:809759/1‑48 (MQ=39) gCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGt < 1:747660/49‑1 (MQ=39) | CAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑GGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGT > NC_000913/3980903‑3980994 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |