| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 15,389 | Δ5,175 bp | insL‑1–insA‑1 | insL‑1, hokC, mokC, sokC, nhaA, nhaR, insB‑1, insA‑1 | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 15389 | 20563 | 5175 | 21 [0] | [0] 21 | insL‑1–insA‑1 | insL‑1,hokC,mokC,sokC,nhaA,nhaR,insB‑1,insA‑1 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 15388 | 0 (0.000) | 21 (0.710) | 18/94 | 0.3 | 100% | noncoding (2/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | 20564 = | 0 (0.000) | intergenic (‑56/+251) | insA‑1/rpsT | IS1 protein InsA/30S ribosomal subunit protein S20 | |||||
GGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/15342‑15388‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTC > NC_000913/20564‑20608 GGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGGCACTCTA > 1:490278/1‑49 TGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCTACC > 1:547070/1‑49 GAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAAT < 1:524335/48‑1 GAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAAT < 1:181211/48‑1 AGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTG < 1:330320/49‑1 GATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGT < 1:2238834/49‑1 TGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCA < 1:2112011/49‑1 AGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAAT < 1:1725929/49‑1 GCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATA < 1:496817/49‑1 CCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCC < 1:2208612/49‑1 TAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATAT < 1:1486380/49‑1 TAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCAT < 1:337357/47‑1 AAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTC < 1:336060/49‑1 GTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTT < 1:1453995/49‑1 TGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTT < 1:2115225/49‑1 GGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTG > 1:941605/1‑49 GCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGT > 1:2265128/1‑49 GGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGG > 1:2129300/1‑49 GGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGG > 1:1136855/1‑49 ACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTC > 1:1962733/1‑49 ACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTC > 1:1565241/1‑49 GGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/15342‑15388‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTC > NC_000913/20564‑20608 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |