Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 332,366 Δ44,951 bp pdeL–yaiL 39 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 332366 377316 44951 29 [0] [0] 30 pdeL–yaiL pdeL,yahB,yahC,yahD,yahE,yahF,yahG,yahH,yahI,yahJ,yahK,yahL,yahM,yahN,yahO,prpR,prpB,prpC,prpD,prpE,codB,codA,cynR,cynT,cynS,cynX,lacA,lacY,lacZ,lacI,mhpR,mhpA,mhpB,mhpC,mhpD,mhpF,mhpE,mhpT,yaiL

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3323650 (0.000)29 (0.950) 25/96 0.1 100% intergenic (+489/‑6) yahV/pdeL protein YahV/DNA‑binding transcriptional activator/c‑di‑GMP phosphodiesterase PdeL
?NC_000913 377317 = NA (NA)intergenic (+6/+218) yaiL/frmB DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB

CGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/332321‑332365
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTAT  >  NC_000913/377317‑377362
                                                                                           
CGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGAT                                             >  1:910338/1‑48
 GACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGATA                                            <  1:421481/48‑1
  ACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAAG                                          <  1:1306097/49‑1
  ACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAAG                                          >  1:945236/1‑49
  ACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAAG                                          <  1:244321/49‑1
   CAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAAGT                                         <  1:1553338/49‑1
     GGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAAGTCG                                       >  1:117638/1‑49
     GGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAAGTCG                                       <  1:1278589/49‑1
           CACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCG                                   >  1:1088556/1‑47
            ACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAG                                <  1:512928/49‑1
                ATACTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGC                            >  1:350883/1‑49
                 TACTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCC                           >  1:2102057/1‑49
                   CTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTG                         <  1:95322/49‑1
                   CTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTG                         <  1:1364598/49‑1
                      AACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATG                      >  1:2251740/1‑49
                      AACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGAT                       <  1:772508/48‑1
                       ACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGC                     >  1:331012/1‑49
                       ACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGC                     <  1:139836/49‑1
                       ACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGC                     <  1:1358453/49‑1
                         AGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGA                   >  1:719891/1‑49
                          GCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGAC                  <  1:2139700/49‑1
                           CGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACG                 >  1:333278/1‑49
                                AAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATG            <  1:312155/49‑1
                                AAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATG            >  1:1401044/1‑49
                                AAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATG            <  1:920198/49‑1
                                     TAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGT       >  1:742992/1‑49
                                       AAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCT     >  1:512748/1‑49
                                        AGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTT    <  1:1105513/49‑1
                                          GTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTAT  <  1:1789842/49‑1
                                                                                           
CGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/332321‑332365
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTAT  >  NC_000913/377317‑377362

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.