| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 565,055 | Δ21,054 bp | [intD]–ompT | 37 genes [intD], xisD, exoD, renD, insE‑3, insF‑3, renD, emrE, ylcJ, ybcK, ybcL, ybcM, ylcH, ybcN, ninE, ybcO, rusA, ylcG, ybcQ, nmpC, insH‑2, nmpC, essD, rrrD, rzpD, rzoD, borD, ybcV, ybcW, ylcI, nohD, aaaD, tfaD, ybcY, tfaX, appY, ompT |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 565055 | 586108 | 21054 | 26 [0] | [0] 28 | [intD]–ompT | [intD],xisD,exoD,renD,insE‑3,insF‑3,renD,emrE,ylcJ,ybcK,ybcL,ybcM,ylcH,ybcN,ninE,ybcO,rusA,ylcG,ybcQ,nmpC,insH‑2,nmpC,essD,rrrD,rzpD,rzoD,borD,ybcV,ybcW,ylcI,nohD,aaaD,tfaD,ybcY,tfaX,appY,ompT |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 565054 | 0 (0.000) | 23 (0.850) | 21/86 | 0.1 | 100% | coding (925/1164 nt) | intD | DLP12 prophage; putative integrase |
| ? | NC_000913 | 586109 = | 0 (0.000) | intergenic (‑476/+38) | ompT/envY | outer membrane protease VII (outer membrane protein 3b)/DNA‑binding transcriptional activator EnvY | |||||
CCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/565010‑565054‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACAT > NC_000913/586109‑586155 CCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCA > 1:1694939/1‑49 CAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCAT < 1:1067139/49‑1 AGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATT > 1:955196/1‑49 AGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATT > 1:915100/1‑49 AGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATT > 1:607767/1‑49 CCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCC < 1:977895/49‑1 CCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCC > 1:1304802/1‑49 CCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCC < 1:2036821/49‑1 AGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGT > 1:1119069/1‑49 GGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTC < 1:269201/49‑1 GTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCT > 1:2318740/1‑49 TGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTT < 1:764373/49‑1 TGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTAT > 1:2246552/1‑49 TGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTAT < 1:241888/49‑1 TGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGT > 1:2109888/1‑49 GAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTT > 1:2234542/1‑49 AGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTT < 1:726587/48‑1 TCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCG < 1:979549/49‑1 ATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGC < 1:2226/48‑1 GAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTT < 1:1942357/48‑1 GGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTT > 1:405337/1‑49 GAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTT > 1:1211303/1‑48 ATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCAC > 1:1260210/1‑48 TTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACA > 1:2186456/1‑49 CCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACAT < 1:2113898/48‑1 CCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCA < 1:755748/45‑1 CCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/565010‑565054‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACAT > NC_000913/586109‑586155 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |