| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 603,467 | Δ5,885 bp | [ybdG]–insL‑2 | [ybdG], nfsB, ybdF, ybdJ, ybdK, sokE, hokE, insL‑2 | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 603467 | 609351 | 5885 | 27 [0] | [0] 27 | [ybdG]–insL‑2 | [ybdG],nfsB,ybdF,ybdJ,ybdK,sokE,hokE,insL‑2 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 603466 | 0 (0.000) | 25 (0.860) | 23/92 | 0.1 | 100% | coding (1198/1248 nt) | ybdG | miniconductance mechanosensitive channel YbdG |
| ? | NC_000913 | 609352 = | 0 (0.000) | intergenic (+175/+107) | insL‑2/entD | IS186/IS421 transposase/phosphopantetheinyl transferase EntD | |||||
ACTGCTTAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/603418‑603466‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTG > NC_000913/609352‑609398 ACTGCTTAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCG < 1:1328082/48‑1 GCTTAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAGT > 1:1666705/1‑48 CTTAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAA > 1:77602/1‑49 AAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAATCC > 1:1386118/1‑49 AAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAAT < 1:910282/47‑1 AATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAATCCC > 1:2110271/1‑49 CACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAATCCCCGCA < 1:1877727/49‑1 CACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAATCCCCGCA > 1:1730678/1‑49 cCCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAATCCCCGCAT < 1:1631056/48‑1 ACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAATCCCCGCAT < 1:471276/49‑1 CCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAGTAATCCCCGCATAT > 1:1124141/1‑49 CAGAGAGCGAATATCATTGCCGGTTGGCGAGTAATCCCCGCATATCCGG > 1:1317904/1‑49 GAGAGCGAATATCATTGCCGGTTGGCGAGTAATCCCCGCATATCCGGTT > 1:1969374/1‑49 AGCGAATATCATTGCCGGTTGGCGAGTAATCCCCGCATATCCGGTTGT > 1:643415/1‑48 GCGAATATCATTGCCGGTTGGCGAGTAATCCCCGCATATCCGGTTGTCA < 1:1680242/49‑1 CGAATATCATTGCCGGTTGGCGAGTAATCCCCGCATATCCGGTTGTCAG > 1:2221790/1‑49 GAATATCATTGCCGGTTGGCGAGTAATCCCCGCATATCCGGTTGTCAGG > 1:1345687/1‑49 GAATATCATTGCCGGTTGGCGAGTAATCCCCGCATATCCGGTTGTCAGG > 1:774775/1‑49 AATATCATTGCCGGTTGGCGAGTAATCCCCGCATATCCGGTTGTCAGGT > 1:487558/1‑49 TTGCCGGTTGGCGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATG < 1:1331153/49‑1 CCGGTTGGCGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTA < 1:2355254/49‑1 CCGGTTGGCGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGT < 1:2043726/48‑1 CGGTTGGCGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAA < 1:380875/49‑1 GTTGGCGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGG < 1:1123327/49‑1 GCGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACC < 1:1083410/49‑1 GCGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCAC < 1:1568777/48‑1 GAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTG > 1:2168926/1‑49 GAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTG > 1:589264/1‑49 ACTGCTTAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/603418‑603466‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTG > NC_000913/609352‑609398 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |