| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 687,860 | Δ1,185 bp | IS5‑mediated | insH‑3 | insH‑3 |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 687860 | 689044 | 1185 | 24 [0] | [0] 24 | insH‑3 | insH‑3 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 687859 | 0 (0.000) | 24 (0.810) | 24/94 | 0.1 | 100% | noncoding (1187/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 689045 = | 0 (0.000) | noncoding (1/1195 nt) | IS5 | repeat region | |||||
TCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/687816‑687859‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTTT > NC_000913/689045‑689089 TCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAG > 1:1214811/1‑49 CTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGG > 1:1619566/1‑49 CTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACAT > 1:1697520/1‑49 TTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATT > 1:355584/1‑48 TATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTT < 1:1824802/48‑1 TATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATT < 1:2187225/47‑1 ATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAG > 1:1284802/1‑49 GTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTT > 1:1669480/1‑49 GTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTT < 1:353790/48‑1 TGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTG > 1:1731167/1‑49 TGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTT < 1:2213648/48‑1 AGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGC > 1:398169/1‑48 GTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCT > 1:224978/1‑48 GTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATG < 1:2204785/48‑1 TGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTA < 1:1692354/49‑1 CTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTA > 1:242109/1‑46 GTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGA > 1:826207/1‑48 TTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATA > 1:2211492/1‑49 TTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGAT < 1:1160545/48‑1 TTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGA < 1:129187/47‑1 TAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATAT > 1:1147869/1‑49 AGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGT > 1:1674072/1‑49 GGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTT < 1:1132326/49‑1 GTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTTT > 1:920985/1‑49 TCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/687816‑687859‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTTT > NC_000913/689045‑689089 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |