| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 765,208 | Δ5,405 bp | [mngR]–mngB | [mngR], mngA, mngB | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 765208 | 770612 | 5405 | 25 [0] | [0] 24 | [mngR]–mngB | [mngR],mngA,mngB |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 765207 | 0 (0.000) | 23 (0.770) | 19/94 | 0.2 | 100% | coding (669/723 nt) | mngR | DNA‑binding transcriptional repressor MngR |
| ? | NC_000913 | 770613 = | 0 (0.000) | intergenic (+2/‑845) | mngB/cydA | alpha‑mannosidase/cytochrome bd‑I ubiquinol oxidase subunit I | |||||
GCGATGATTTTCGCTGCGCTATCAGGGTAAATTTATAGTCATCGGTATTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/765158‑765207‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGAC > NC_000913/770613‑770656 GCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA > 1:2329066/1‑49 GATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA > 1:66155/1‑47 ATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAA > 1:2337963/1‑49 TTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAAT < 1:1045305/49‑1 TTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAAT < 1:2164913/49‑1 CGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAA > 1:610635/1‑49 GCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAA < 1:2188063/48‑1 CGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAA < 1:49090/49‑1 CGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGA < 1:440587/48‑1 TATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGC > 1:2177732/1‑48 TATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGC > 1:1445129/1‑48 ATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCA > 1:487881/1‑49 TCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCC < 1:2077195/47‑1 CAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACA > 1:903631/1‑49 GTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATG > 1:240378/1‑49 aTTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCG > 1:1020418/2‑49 aTTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCG > 1:1107865/2‑49 TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGG < 1:1871202/49‑1 ATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGC > 1:1533866/1‑48 ATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATT < 1:2283506/48‑1 TCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGT < 1:389236/49‑1 CGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTT > 1:860593/1‑49 GTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGA < 1:2082575/49‑1 TATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGAC < 1:1873193/49‑1 ATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGAC > 1:1260739/1‑48 GCGATGATTTTCGCTGCGCTATCAGGGTAAATTTATAGTCATCGGTATTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/765158‑765207‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGAC > NC_000913/770613‑770656 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |