| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,299,499 | Δ1,199 bp | insH21 | insH21 | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1299499 | 1300697 | 1199 | 18 [0] | [0] 18 | insH21 | insH21 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 14 (0.500) | 13/88 | 0.6 | 100% | intergenic (+253/‑33) | ychE/insH21 | putative inner membrane protein/IS5 transposase and trans‑activator |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+151/‑484) | insH21/oppA | IS5 transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein | |||||
ATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1299449‑1299498‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTG > NC_000913/1300698‑1300743 ATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTA < 1:594731/49‑1ATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCT > 1:926592/1‑48ATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCT < 1:1053855/48‑1 TTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAA < 1:945675/49‑1 TGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAA > 1:1589076/1‑49 AAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATA < 1:471437/49‑1 AATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAA < 1:900042/49‑1 TGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATA < 1:2013759/49‑1 ATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAATT > 1:920536/1‑49 TAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAATTGT > 1:330202/1‑49 ATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAATTGTTA < 1:1984364/49‑1 CACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAATTGTTAAAT < 1:766949/48‑1 ACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAATTGTTAAATTA > 1:1501754/1‑49 ACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAATTGTTAAATTA < 1:660140/49‑1 ACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAATTGTTAAATTA > 1:1073835/1‑49 CTTTGGTAGAGGAAAGTGCTAAATAATAATCAATTGTTAAATTATTGTG > 1:1250668/1‑49 GGTAGAGGAAAGTGCTAAATAATAATCAATTGTTAAATTATTGTGCATT > 1:1702854/1‑49 GAGGAAAGTGCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCAC < 1:1209941/49‑1 CTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACT > 1:1364180/1‑49 TAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTG > 1:168234/1‑49 AATGATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTG < 1:283443/47‑1 ATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1299449‑1299498‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTG > NC_000913/1300698‑1300743 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |