| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,872,030 | Δ1,437 bp | [dgcJ] | [dgcJ] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1872030 | 1873466 | 1437 | 22 [0] | [0] 23 | [dgcJ] | [dgcJ] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1872029 | 0 (0.000) | 21 (0.710) | 20/94 | 0.2 | 100% | intergenic (+169/‑12) | cdgI/dgcJ | putative c‑di‑GMP binding protein CdgI/putative diguanylate cyclase DgcJ |
| ? | NC_000913 | 1873467 = | 0 (0.000) | coding (1427/1491 nt) | dgcJ | putative diguanylate cyclase DgcJ | |||||
CGCAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1871984‑1872029‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGAAC > NC_000913/1873467‑1873513 CGCAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATG > 1:1676297/1‑49 GCAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGC < 1:2312553/49‑1 TCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGCGTAT < 1:528825/49‑1 TCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGCGTA > 1:837425/1‑48 GAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGCGTATA > 1:1289430/1‑48 AACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGCGTATAAA < 1:1347699/49‑1 ACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGCGTATAAAG > 1:1315392/1‑49 CTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGCGTATAAAGC > 1:1599602/1‑49 CTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGCGTATAAAGC > 1:570285/1‑49 TATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGCGTATAAAGCT < 1:15409/47‑1 TCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGCGTATAAAGCTTCC < 1:63606/48‑1 GTTTTCTCGTTTCACTAACCGAAGGAGATGCGTATAAAGCTTCCGAT < 1:1843848/47‑1 GTTTTCTCGTTTCACTAACCGAAGGAGATGCGTATAAAGCTTCCG < 1:2232181/45‑1 TTTCTCGTTTCACTAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGC > 1:1753137/1‑49 TCTCGTTTCACTAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGT > 1:436661/1‑49 GTTTCACTAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTA > 1:975834/1‑48 GTTTCACTAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTT < 1:1058804/47‑1 ACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATA < 1:1778781/49‑1 GAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAG > 1:1375411/1‑48 GGAGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAG > 1:2342494/1‑48 GAGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGAA > 1:1167306/1‑49 GATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGAAC > 1:942844/1‑48 CGCAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1871984‑1872029‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGAAC > NC_000913/1873467‑1873513 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |