| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,962,566 | Δ16,764 bp | flhE–insA‑5 | 17 genes flhE, flhA, flhB, cheZ, cheY, cheB, cheR, tap, tar, cheW, cheA, motB, motA, flhC, flhD, insB‑5, insA‑5 |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1962566 | 1979329 | 16764 | 22 [0] | [0] 22 | flhE–insA‑5 | flhE,flhA,flhB,cheZ,cheY,cheB,cheR,tap,tar,cheW,cheA,motB,motA,flhC,flhD,insB‑5,insA‑5 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1962565 | 0 (0.000) | 22 (0.740) | 19/94 | 0.2 | 100% | intergenic (+105/+15) | yecT/flhE | protein YecT/flagellar protein |
| ? | NC_000913 | 1979330 = | 0 (0.000) | intergenic (‑115/‑423) | insA‑5/uspC | IS1 protein InsA/universal stress protein C | |||||
GACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1962518‑1962565‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAA > NC_000913/1979330‑1979370 GACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTC < 1:622005/49‑1 ATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGC > 1:523327/1‑48 TCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTA < 1:1449803/49‑1 GAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTAC < 1:2337884/48‑1 AGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGC < 1:201944/49‑1 AGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGC > 1:669374/1‑49 GCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCT < 1:886000/49‑1 CTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAG < 1:428492/49‑1 TTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAA < 1:1192368/48‑1 CACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGC > 1:1451706/1‑48 CACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGC > 1:2014831/1‑48 TGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAA > 1:1010984/1‑48 AGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAAT < 1:1648405/49‑1 GTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAAT > 1:287746/1‑48 TTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAA < 1:2294477/48‑1 AACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAG > 1:1258119/1‑48 TACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAAT > 1:2021408/1‑48 CTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAAT < 1:2004327/49‑1 CTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAA < 1:1683992/48‑1 GAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAA > 1:2151623/1‑49 GAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAA > 1:618774/1‑49 GAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAA > 1:1107545/1‑49 GACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1962518‑1962565‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAA > NC_000913/1979330‑1979370 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |