| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,997,112 | Δ26,567 bp | [tcyN]–[fliR] | 32 genes [tcyN], tcyL, dcyD, tcyJ, fliZ, fliA, fliC, fliD, fliS, fliT, amyA, yedD, yedE, yedF, yedK, yedL, yedN, intG, fliE, fliF, fliG, fliH, fliI, fliJ, fliK, fliL, fliM, fliN, fliO, fliP, fliQ, [fliR] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1997112 | 2023678 | 26567 | 13 [0] | [0] 13 | [tcyN]–[fliR] | [tcyN],tcyL,dcyD,tcyJ,fliZ,fliA,fliC,fliD,fliS,fliT,amyA,yedD,yedE,yedF,yedK,yedL,yedN,intG,fliE,fliF,fliG,fliH,fliI,fliJ,fliK,fliL,fliM,fliN,fliO,fliP,fliQ,[fliR] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1997111 | 0 (0.000) | 12 (0.390) | 10/96 | 1.1 | 100% | coding (704/753 nt) | tcyN | cystine ABC transporter ATP binding subunit |
| ? | NC_000913 | 2023679 = | 0 (0.000) | intergenic (+1/‑289) | fliR/rcsA | flagellar biosynthesis protein FliR/DNA‑binding transcriptional activator RcsA | |||||
CAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1997068‑1997111‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAA > NC_000913/2023679‑2023721 CAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTTCG > 1:2336765/1‑49 AGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAAC > 1:1482353/1‑49 GAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACG < 1:271749/49‑1 GAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACG < 1:963947/49‑1 TCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTTCGTAACGTTTATCAT > 1:100448/1‑49 GAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGT > 1:1490302/1‑49 GAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGT > 1:215401/1‑49 GAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCA < 1:641772/46‑1 CTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCC > 1:1147017/1‑48 CGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGG < 1:1627175/49‑1 TGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAA > 1:1651398/1‑48 CTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAA > 1:1785365/1‑48 CAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1997068‑1997111‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAA > NC_000913/2023679‑2023721 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |