| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,286,401 | Δ3,780 bp | [yejO]–[yejO] | [yejO], insH‑8, [yejO] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2286401 | 2290180 | 3780 | 30 [0] | [0] 29 | [yejO]–[yejO] | [yejO],insH‑8,[yejO] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2286400 | 0 (0.000) | 29 (0.950) | 23/96 | 0.1 | 100% | pseudogene (2515/2525 nt) | yejO | adhesin‑like autotransporter YejO |
| ? | NC_000913 | 2290181 = | 0 (0.000) | intergenic (‑1/‑319) | yejO/narP | adhesin‑like autotransporter YejO/DNA‑binding transcriptional dual regulator NarP | |||||
GACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2286354‑2286400‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTAC > NC_000913/2290181‑2290227 GACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCTG < 1:1808828/49‑1GACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCTG < 1:845021/49‑1 TGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCTGAGCTT < 1:1264300/49‑1 ACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCTGAGCTTT > 1:1579811/1‑48 ATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCTGAGCTTTCATCC > 1:2211644/1‑49 TCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCTGAGCTTTCATCCT < 1:704997/49‑1 CACAGCCTGTTTATTTTCTGTTATCAGAACGTCCTGAGCTTTCATCCTA > 1:658794/1‑49 ACAGCCTGTTTATTTTCTGTTATCAGAACGTCCTGAGCTTTCATCCTAT < 1:1205528/49‑1 ACAGCCTGTTTATTTTCTGTTATCAGAACGTCCTGAGCTTTCATCCTAT > 1:1082903/1‑49 AGCCTGTTTATTTTCTGTTATCAGAACGTCCTGAGCTTTCATCCTATGA < 1:1601843/49‑1 GCCTGTTTATTTTCTGTTATCAGAACGTCCTGAGCTTTCATCCTATGAA < 1:339636/49‑1 GCCTGTTTATTTTCTGTTATCAGAACGTCCTGAGCTTTCATCCTATGAA < 1:2359565/49‑1 GCCTGTTTATTTTCTGTTATCAGAACGTCCTGAGCTTTCATCCTATGAA < 1:2212782/49‑1 CCTGTTTATTTTCTGTTATCAGAACGTCCTGAGCTTTCATCCTATGAAA > 1:1678237/1‑49 CTGTTTATTTTCTGTTATCAGAACGTCCTGAGCTTTCATCCTATGAAAT > 1:1342806/1‑49 TGTTTATTTTCTGTTATCAGAACGTCCTGAGCTTTCATCCTATGAAAT > 1:432129/1‑48 TGTTTATTTTCTGTTATCAGAACGTCCTGAGCTTTCATCCTATGAAAT > 1:878877/1‑48 GTTTATTTTCTGTTATCAGAACGTCCTGAGCTTTCATCCTATGAAATT > 1:219598/1‑48 TATTTTCTGTTATCAGAACGTCCTGAGCTTTCATCCTATGAAATTAAT < 1:284877/48‑1 ATTTTCTGTTATCAGAACGTCCTGAGCTTTCATCCTATGAAATTAATTG > 1:1314240/1‑49 TTTCTGTTATCAGAACGTCCTGAGCTTTCATCCTATGAAATTAATTGCT > 1:1642971/1‑49 TTATCAGAACGTCCTGAGCTTTCATCCTATGAAATTAATTGCTGTTAA > 1:725395/1‑48 TTATCAGAACGTCCTGAGCTTTCATCCTATGAAATTAATTGCTGTTA < 1:63227/47‑1 TATCAGAACGTCCTGAGCTTTCATCCTATGAAATTAATTGCTGTTAA > 1:1452075/1‑47 ACGTCCTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGG < 1:1759116/49‑1 CGTCCTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGG < 1:1537849/49‑1 CTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTAC < 1:213789/48‑1 CTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTAC < 1:1988948/48‑1 CTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTAC < 1:1719860/48‑1 GACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2286354‑2286400‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTAC > NC_000913/2290181‑2290227 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |