| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,320,144 | Δ16,489 bp | [atoS]–[yfaA] | [atoS], atoC, atoD, atoA, atoE, atoB, yfaP, yfaQ, yfaS, yfaT, [yfaA] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2320144 | 2336632 | 16489 | 24 [0] | [0] 25 | [atoS]–[yfaA] | [atoS],atoC,atoD,atoA,atoE,atoB,yfaP,yfaQ,yfaS,yfaT,[yfaA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2320143 | 0 (0.000) | 24 (0.810) | 22/94 | 0.1 | 100% | coding (101/1827 nt) | atoS | sensory histidine kinase AtoS |
| ? | NC_000913 | 2336633 = | 0 (0.000) | coding (12/1689 nt) | yfaA | DUF2138 domain‑containing protein YfaA | |||||
GATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2320096‑2320143‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTT > NC_000913/2336633‑2336675 GATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATT > 1:2061814/1‑49 ATGGCAATCCTGATGGTCATTGTCTCAACGCTTACTATTGGTTATATTT < 1:1858882/49‑1 GGCAATCCTGACGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCA > 1:1539084/1‑49 CAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACC < 1:1426546/49‑1 CAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCAC > 1:124188/1‑48 AATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCA > 1:143594/1‑49 TGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCAT > 1:2341750/1‑49 ATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTG < 1:1411495/49‑1 TGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGC < 1:1169482/49‑1 GTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCA < 1:4425/49‑1 GTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCC < 1:259521/48‑1 CAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGT < 1:1998807/49‑1 CAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGT < 1:2189885/49‑1 AACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTG > 1:1166256/1‑49 CGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTA > 1:1419502/1‑49 GCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTAT < 1:1915596/49‑1 GCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTAT < 1:2218224/49‑1 CTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATA < 1:78930/49‑1 ATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGC > 1:762275/1‑49 TTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCC < 1:2211307/49‑1 TTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAG < 1:2295654/47‑1 GTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATT < 1:1635473/49‑1 TTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTT < 1:206992/49‑1 TTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTT > 1:668485/1‑49 GATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2320096‑2320143‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTT > NC_000913/2336633‑2336675 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |