| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,509,631 | Δ8,319 bp | [yfeO]–pdeA | [yfeO], ypeC, mntH, nupC, insL‑3, pdeA | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2509631 | 2517949 | 8319 | 26 [0] | [0] 26 | [yfeO]–pdeA | [yfeO],ypeC,mntH,nupC,insL‑3,pdeA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2509630 | 0 (0.000) | 26 (0.850) | 22/96 | 0.1 | 100% | coding (1/1257 nt) | yfeO | putative transport protein YfeO |
| ? | NC_000913 | 2517950 = | 0 (0.000) | intergenic (‑118/+91) | pdeA/alaX | putative c‑di‑GMP phosphodiesterase PdeA/tRNA‑Ala | |||||
TGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2509590‑2509630‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGGCAAAAA > NC_000913/2517950‑2517997 TGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACACAGGCGG > 1:1794853/1‑48 GGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACACAGGCGGCA > 1:173847/1‑49 CAAACTAAGTATCTGACCCCGCATAAGGAATAGAACACAGGCGGCACTA < 1:1119622/49‑1 CTAAGTATCTGACCCCGCATAAGGAATAGAACACAGGCGGCACTAACCC < 1:1855914/49‑1 AGTATCTGACCCCGCATAAGGAATAGAACACAGGCGGCACTAACCCGGA > 1:451269/1‑49 GTATCTGACCCCGCATAAGGAATAGAACACAGGCGGCACTAACCCGGAC < 1:1697909/49‑1 GTATCTGACCCCGCATAAGGAATAGAACACAGGCGGCACTAACCCGGAC < 1:1983402/49‑1 TATCTGACCCCGCATAAGGAATAGAACACAGGCGGCACTAACCCGGACG > 1:1693743/1‑49 CTGACCCCGCATAAGGAATAGAACACAGGCGGCACTAACCCGGACG > 1:1051025/1‑46 CTGACCCCGCATAAGGAATAGAACACAGGCGGAACAAACCCGGACG > 1:2106940/1‑46 CCCCGCATAAGGAATAGAACACAGGCGGCACTAACCCGGACGTAGACTG < 1:1919973/49‑1 CCCGCATAAGGAATAGAACACAGGCGGCACTAACCCGGACGTAGACTG > 1:404081/1‑48 CGCATAAGGAATAGAACACAGGCGGCACTAACCCGGACGTAGACTGTAT > 1:1246279/1‑49 CATAAGGAATAGAACACAGGCGGCACTAACCCGGACGTAGACTGTATTA < 1:422434/49‑1 ATAAGGAATAGAACACAGGCGGCACTAACCCGGACGTAGACTGTATTA > 1:149187/1‑48 TAAGGAATAGAACACAGGCGGCACTAACCCGGACGTAGACTGTATTACA < 1:948256/49‑1 AGGAATAGAACACAGGCGGCACTAACCCGGACGTAGACTGTATTACAA > 1:89361/1‑48 GGAATAGAACACAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAA < 1:644639/49‑1 AGAACACAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGG > 1:792628/1‑48 GAACACAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGGCA < 1:1711760/49‑1 GAACACAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGGCA < 1:1037078/49‑1 GAACACAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGGC > 1:1917465/1‑48 ACACAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGGCAAA < 1:189978/49‑1 ACAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGGCAAAAA < 1:188449/49‑1 ACAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGGCAAAAA < 1:1064637/49‑1 ACAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGGCAAA > 1:338558/1‑47 TGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2509590‑2509630‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGGCAAAAA > NC_000913/2517950‑2517997 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |