| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,601,201 | Δ13,595 bp | [hyfA]–focB | [hyfA], hyfB, hyfC, hyfD, hyfE, hyfF, hyfG, hyfH, hyfI, hyfJ, hyfR, focB | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2601201 | 2614795 | 13595 | 23 [0] | [0] 25 | [hyfA]–focB | [hyfA],hyfB,hyfC,hyfD,hyfE,hyfF,hyfG,hyfH,hyfI,hyfJ,hyfR,focB |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2601200 | 0 (0.000) | 23 (0.760) | 20/96 | 0.2 | 100% | intergenic (+252/‑1) | bcp/hyfA | thiol peroxidase/hydrogenase 4 component A |
| ? | NC_000913 | 2614796 = | 0 (0.000) | intergenic (+14/+24) | focB/yfgO | putative formate transporter/putative transporter YfgO | |||||
TATGCAATATGAAATGCAATGTTTCATATCATTTTCAAGGAGCCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2601154‑2601200‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGATTTGCCCATC > NC_000913/2614796‑2614843 TATGCAATATGAAATGCAATGTTTCATATCATTTTCAAGGAGCCGACC < 1:1801727/48‑1 ATGCAATATGAAATGCAATGTTTCATATCATTTTCAAGGAGCCGACCG > 1:762018/1‑48 AATATGAAATGCAATGTTTCATATCATTTTCAAGGAGCCGACCGAAACA < 1:1851705/49‑1 AATATGAAATGCAATGTTTCATATCATTTTCAAGGAGCCGACCGAAA > 1:765450/1‑47 ATATGAAATGCAATGTTTCATATCATTTTCAAGGAGCCGACCGAAACAG > 1:388114/1‑49 ATGAAATGCAATGTTTCATATCATTTTCAAGGAGCCGACCGAAACAGTT > 1:972291/1‑49 TGAAATGCAATGTTTCATATCATTTTCAAGGAGCCGACCGAAACAGTTC < 1:1714223/49‑1 GAAATGCAATGTTTCATATCATTTTCAAGGAGCCGACCGAAACAGTTCG > 1:1355354/1‑49 GAAATGCAATGTTTCATATCATTTTCAAGGAGCCGACCGAAACAGTTCG > 1:515189/1‑49 AAATGCAATGTTTCATATCATTTTCAAGGAGCCGACCGAAACAGTTCGT > 1:63212/1‑49 AAATGCAATGTTTCATATCATTTTCAAGGAGCCGACCGAAACAGTTCGT > 1:51103/1‑49 TGCAATGTTTCATATCATTTTCAAGGAGCCGACCGAAACAGTTCGTCGG > 1:1382209/1‑49 GTTTCATATCATTTTCAAGGAGCCGACCGAAACAGTTCGTCGGGCTG > 1:1866888/1‑47 TTTCATATCATTTTCAAGGAGCCGACCGAAACAGTTCGTCGGGCTG > 1:672793/1‑46 ATCATTTTCAAGGAGCCGACCGAAACAGTTCGTCGGGCTGAAGATTATT > 1:497804/1‑49 CATTTTCAAGGAGCCGACCGAAACAGTTCGTCGGGCTGAAGATTATTCT > 1:243931/1‑49 CATTTTCAAGGAGCCGACCGAAACAGTTCGTCGGGCTGAAGATTATTCT > 1:1586984/1‑49 ATTTTCAAGGAGCCGACCGAAACAGTTCGTCGGGCTGAAGATTATTCTT > 1:1255607/1‑49 TTCAAGGAGCCGACCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCG > 1:308864/1‑49 GAGCCGACCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGATTT < 1:2267017/49‑1 GCCGACCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGATTTGC > 1:979487/1‑49 CCGACCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGATTTGCC > 1:2133500/1‑49 CCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGATTTGCCCATC < 1:2134649/49‑1 TATGCAATATGAAATGCAATGTTTCATATCATTTTCAAGGAGCCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2601154‑2601200‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGATTTGCCCATC > NC_000913/2614796‑2614843 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |