| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,756,160 | Δ35,091 bp | [intA]–[lhgO] | 33 genes [intA], yfjH, alpA, yfjI, yfjJ, abpB, abpA, yfjM, rnlA, rnlB, yfjP, yfjQ, yfjR, ypjK, yfjS, yfjT, yfjU, yfjV, yfjW, ypjI, yfjX, yfjY, ypjJ, yfjZ, ypjF, ypjA, pinH, ypjB, ypjC, ileY, ygaQ, csiD, [lhgO] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2756160 | 2791250 | 35091 | 50 [0] | [0] 49 | [intA]–[lhgO] | [intA],yfjH,alpA,yfjI,yfjJ,abpB,abpA,yfjM,rnlA,rnlB,yfjP,yfjQ,yfjR,ypjK,yfjS,yfjT,yfjU,yfjV,yfjW,ypjI,yfjX,yfjY,ypjJ,yfjZ,ypjF,ypjA,pinH,ypjB,ypjC,ileY,ygaQ,csiD,[lhgO] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2756159 | 0 (0.000) | 48 (1.610) | 34/94 | 0.0 | 100% | coding (1/1242 nt) | intA | CP4‑57 prophage; integrase |
| ? | NC_000913 | 2791251 = | 0 (0.000) | intergenic (+1/‑22) | lhgO/gabD | L‑2‑hydroxyglutarate oxidase/NADP(+)‑dependent succinate‑semialdehyde dehydrogenase | |||||
ACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2756110‑2756159‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATT > NC_000913/2791251‑2791298 ACGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCA < 1:2285541/49‑1 CGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAC < 1:1704386/49‑1 CGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAC < 1:1625808/49‑1 GAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACC > 1:1053013/1‑49 GAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACC > 1:1506913/1‑49 AAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTT > 1:375263/1‑49 AAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTT < 1:1320527/49‑1 CTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAA < 1:413930/49‑1 TCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAA > 1:2119345/1‑48 CTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAA > 1:2214765/1‑49 ATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAA > 1:1197415/1‑47 TTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAG < 1:191879/49‑1 TTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACA < 1:610824/48‑1 TTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACA < 1:2191080/48‑1 TTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACA < 1:743575/48‑1 TTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACA < 1:1336848/48‑1 TTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAA < 1:1501462/46‑1 GTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGA > 1:2186134/1‑49 TTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGA < 1:315404/48‑1 TTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATG > 1:158323/1‑49 ACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATG > 1:1636166/1‑47 CGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAG < 1:423084/49‑1 CGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTA < 1:1907416/48‑1 GTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGC < 1:420023/49‑1 GTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGC > 1:791783/1‑49 GTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGAAGC > 1:807810/1‑49 ggCTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGAT < 1:905687/46‑1 gCTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGA < 1:1974220/48‑1 gCTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGA < 1:562109/48‑1 CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAA < 1:171466/49‑1 AAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAAC > 1:1981225/1‑49 AACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACT < 1:1149800/49‑1 AACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACT < 1:250407/49‑1 AACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACT < 1:1938897/49‑1 AACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAA < 1:1260786/47‑1 ACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTT < 1:164128/49‑1 GCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAA < 1:2057212/49‑1 GCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAA < 1:156608/49‑1 GCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAA > 1:546826/1‑49 CAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAAC < 1:269199/49‑1 GGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGAC < 1:10478/49‑1 GGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGA > 1:643943/1‑48 GAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACA < 1:2146729/49‑1 GAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGA > 1:1277796/1‑47 GACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAG > 1:1889108/1‑48 CCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACT < 1:2014595/48‑1 CCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACT < 1:879953/48‑1 CCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACT < 1:2072871/48‑1 CCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTA < 1:2014203/49‑1 ACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATT < 1:1804731/49‑1 ACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2756110‑2756159‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATT > NC_000913/2791251‑2791298 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |